Dear OpenBabel developers,
the attached patch fixes building current git master (commit
75414ad4e043f16ba72ae51c7ca60f448576688d) with swig-3.0.x:
cd
/builddir/build/BUILD/openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/scripts
&& /bin/swig -perl5 -c++ -small -O -templatereduce -naturalvar
-I/builddir/build/BUILD/openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/include
-I/builddir/build/BUILD/openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/include
-o
/builddir/build/BUILD/openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/scripts/perl/openbabel-perl.cpp
-outdir
/builddir/build/BUILD/openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/scripts/perl
/builddir/build/BUILD/openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/scripts/openbabel-perl.i
/builddir/build/BUILD/openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/scripts/openbabel-perl.i:182:
Error: Unknown SWIG preprocessor directive: CloneData (if this is a block of
target language code, delimit it with %{ and %})
...
and so on.
Regards,
Dominik
--
Fedora http://fedoraproject.org/wiki/User:Rathann
RPMFusion http://rpmfusion.org
"Faith manages."
-- Delenn to Lennier in Babylon 5:"Confessions and Lamentations"
diff -up
openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/scripts/openbabel-perl.i.swig3
openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/scripts/openbabel-perl.i
---
openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/scripts/openbabel-perl.i.swig3
2015-02-04 20:04:57.000000000 +0100
+++ openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/scripts/openbabel-perl.i
2015-02-10 22:17:43.043291031 +0100
@@ -179,7 +179,7 @@ CAST_GENERICDATA_TO(VirtualBond)
%import <openbabel/math/spacegroup.h>
-# CloneData should be used instead of the following method
+%# CloneData should be used instead of the following method
%ignore OpenBabel::OBBase::SetData;
%rename(_local) OpenBabel::local;
%include <openbabel/base.h>
@@ -224,7 +224,7 @@ namespace std { class stringbuf {}; }
%ignore OpenBabel::OBForceField::DiverseConfGen;
#endif
-# Ignore shadowed methods
+%# Ignore shadowed methods
%ignore OpenBabel::OBForceField::VectorSubtract(const double *const, const
double *const, double *);
%ignore OpenBabel::OBForceField::VectorMultiply(const double *const, const
double, double *);
%include <openbabel/forcefield.h>
@@ -234,20 +234,20 @@ namespace std { class stringbuf {}; }
%warnfilter(503) OpenBabel::OBBitVec; // Not wrapping any of the overloaded
operators
%include <openbabel/bitvec.h>
-# Ignore shadowed method
+%# Ignore shadowed method
%ignore OpenBabel::OBRotor::GetRotAtoms() const;
%warnfilter(314); // 'next' is a Perl keyword
%include <openbabel/rotor.h>
%ignore OpenBabel::Swab;
%include <openbabel/rotamer.h>
-# The following %ignores avoid warning messages due to shadowed classes.
-# This does not imply a loss of functionality as (in this case)
-# the shadowed class is identical (from the point of view of SWIG) to
-# the shadowing class.
-# This is because C++ references (&) are transformed by SWIG back into
-# pointers, so that OBAtomIter(OBMol &) would be treated the same as
-# OBAtomIter(OBMol *).
+%# The following %ignores avoid warning messages due to shadowed classes.
+%# This does not imply a loss of functionality as (in this case)
+%# the shadowed class is identical (from the point of view of SWIG) to
+%# the shadowing class.
+%# This is because C++ references (&) are transformed by SWIG back into
+%# pointers, so that OBAtomIter(OBMol &) would be treated the same as
+%# OBAtomIter(OBMol *).
%ignore OBAtomAtomIter(OBAtom &);
%ignore OBAtomBondIter(OBAtom &);
diff -up
openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/scripts/openbabel-python.i.swig3
openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/scripts/openbabel-python.i
---
openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/scripts/openbabel-python.i.swig3
2015-02-04 20:04:57.000000000 +0100
+++
openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/scripts/openbabel-python.i
2015-02-10 22:17:43.043291031 +0100
@@ -229,7 +229,7 @@ CAST_GENERICDATA_TO(SquarePlanarStereo)
%include <openbabel/math/transform3d.h>
%include <openbabel/math/spacegroup.h>
-# CloneData should be used instead of the following method
+%# CloneData should be used instead of the following method
%ignore OpenBabel::OBBase::SetData;
%include <openbabel/base.h>
@@ -291,7 +291,7 @@ OBMol.BeginResidues = OBMol.EndResidues
%ignore OpenBabel::OBDescriptor::LessThan;
%include <openbabel/descriptor.h>
-# Ignore shadowed methods
+%# Ignore shadowed methods
%ignore OpenBabel::OBForceField::VectorSubtract(const double *const, const
double *const, double *);
%ignore OpenBabel::OBForceField::VectorMultiply(const double *const, const
double, double *);
%include <openbabel/forcefield.h>
@@ -312,7 +312,7 @@ OBMol.BeginResidues = OBMol.EndResidues
%warnfilter(503) OpenBabel::OBBitVec; // Not wrapping any of the overloaded
operators
%include <openbabel/bitvec.h>
-# Ignore shadowed method
+%# Ignore shadowed method
%ignore OpenBabel::OBRotor::GetRotAtoms() const;
%include <openbabel/rotor.h>
%ignore OpenBabel::Swab;
@@ -323,13 +323,13 @@ OBMol.BeginResidues = OBMol.EndResidues
%include <openbabel/math/align.h>
#endif
-# The following %ignores avoid warning messages due to shadowed classes.
-# This does not imply a loss of functionality as (in this case)
-# the shadowed class is identical (from the point of view of SWIG) to
-# the shadowing class.
-# This is because C++ references (&) are transformed by SWIG back into
-# pointers, so that OBAtomIter(OBMol &) would be treated the same as
-# OBAtomIter(OBMol *).
+%# The following %ignores avoid warning messages due to shadowed classes.
+%# This does not imply a loss of functionality as (in this case)
+%# the shadowed class is identical (from the point of view of SWIG) to
+%# the shadowing class.
+%# This is because C++ references (&) are transformed by SWIG back into
+%# pointers, so that OBAtomIter(OBMol &) would be treated the same as
+%# OBAtomIter(OBMol *).
%ignore OBAtomAtomIter(OBAtom &);
%ignore OBAtomBondIter(OBAtom &);
@@ -348,9 +348,9 @@ OBMol.BeginResidues = OBMol.EndResidues
%ignore OBResidueIter(OBMol &);
%ignore OBResidueAtomIter(OBResidue &);
-# These classes are renamed so that they can be replaced by Python
-# classes of the same name which provide Pythonic iterators
-# (see %pythoncode section below)
+%# These classes are renamed so that they can be replaced by Python
+%# classes of the same name which provide Pythonic iterators
+%# (see %pythoncode section below)
%rename(_OBAtomAtomIter) OpenBabel::OBAtomAtomIter;
%rename(_OBAtomBondIter) OpenBabel::OBAtomBondIter;
@@ -369,8 +369,8 @@ OBMol.BeginResidues = OBMol.EndResidues
%include <openbabel/obiter.h>
-# The following class, OBiter, is subclassed to provide Python iterators
-# equivalent to the C++ iterators in obiter.h and the plugin iterators
+%# The following class, OBiter, is subclassed to provide Python iterators
+%# equivalent to the C++ iterators in obiter.h and the plugin iterators
%pythoncode %{
class OBIter(object):
@@ -460,7 +460,7 @@ def double_array(mylist):
return c
%}
-# Copy some of the global variables in cvar into the openbabel namespace
+%# Copy some of the global variables in cvar into the openbabel namespace
%pythoncode %{
obErrorLog = cvar.obErrorLog
@@ -471,7 +471,7 @@ atomtyper = cvar.atomtyper
aromtyper = cvar.aromtyper
%}
-# Functions to set the log file to std::cout and std::cerr
+%# Functions to set the log file to std::cout and std::cerr
%ignore OBForceField::SetLogFile(std::ostream *pos);
%extend OpenBabel::OBForceField {
diff -up
openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/scripts/openbabel-ruby.i.swig3
openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/scripts/openbabel-ruby.i
---
openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/scripts/openbabel-ruby.i.swig3
2015-02-04 20:04:57.000000000 +0100
+++ openbabel-75414ad4e043f16ba72ae51c7ca60f448576688d/scripts/openbabel-ruby.i
2015-02-10 22:19:12.334540544 +0100
@@ -181,7 +181,7 @@ CAST_GENERICDATA_TO(VirtualBond)
%import <openbabel/math/spacegroup.h>
-# CloneData should be used instead of the following method
+%# CloneData should be used instead of the following method
%ignore OpenBabel::OBBase::SetData;
%include <openbabel/base.h>
%include <openbabel/generic.h>
@@ -217,7 +217,7 @@ namespace std { class stringbuf {}; }
%include <openbabel/fingerprint.h>
%include <openbabel/descriptor.h>
-# Ignore shadowed methods
+%# Ignore shadowed methods
%ignore OpenBabel::OBForceField::VectorSubtract(const double *const, const
double *const, double *);
%ignore OpenBabel::OBForceField::VectorMultiply(const double *const, const
double, double *);
#ifdef HAVE_EIGEN
@@ -241,13 +241,13 @@ namespace std { class stringbuf {}; }
%ignore OpenBabel::Swab;
%include <openbabel/rotamer.h>
-# The following %ignores avoid warning messages due to shadowed classes.
-# This does not imply a loss of functionality as (in this case)
-# the shadowed class is identical (from the point of view of SWIG) to
-# the shadowing class.
-# This is because C++ references (&) are transformed by SWIG back into
-# pointers, so that OBAtomIter(OBMol &) would be treated the same as
-# OBAtomIter(OBMol *).
+%# The following %ignores avoid warning messages due to shadowed classes.
+%# This does not imply a loss of functionality as (in this case)
+%# the shadowed class is identical (from the point of view of SWIG) to
+%# the shadowing class.
+%# This is because C++ references (&) are transformed by SWIG back into
+%# pointers, so that OBAtomIter(OBMol &) would be treated the same as
+%# OBAtomIter(OBMol *).
%ignore OBAtomAtomIter(OBAtom &);
%ignore OBAtomBondIter(OBAtom &);
------------------------------------------------------------------------------
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