On 13/07/15 10:35, Noel O'Boyle wrote: > Can you provide a test case? http://folding.bmc.uu.se/decane-g4.log.gz
> > On 12 July 2015 at 13:32, David van der Spoel <sp...@xray.bmc.uu.se> wrote: >> Hi, >> >> I compiled a fresh OB clone but get SEGV on a number of programs, >> including babel. >> % babel -ig98 decane-g4.log -osdf koko.sdf >> Segmentation fault >> >> and >> >> % valgrind !! >> valgrind babel -ig98 decane-g4.log -osdf koko.sdf >> ==27734== Memcheck, a memory error detector >> ==27734== Copyright (C) 2002-2012, and GNU GPL'd, by Julian Seward et al. >> ==27734== Using Valgrind-3.8.1 and LibVEX; rerun with -h for copyright info >> ==27734== Command: babel -ig98 decane-g4.log -osdf koko.sdf >> ==27734== >> ==27734== Invalid write of size 1 >> ==27734== at 0x3DF1C0E35A: _dl_signal_error (in /lib64/ld-2.12.so) >> ==27734== by 0x3DF1C0E4D9: _dl_signal_cerror (in /lib64/ld-2.12.so) >> ==27734== by 0x3DF1C0A319: _dl_lookup_symbol_x (in /lib64/ld-2.12.so) >> ==27734== by 0x3DF1C0E03F: _dl_fixup (in /lib64/ld-2.12.so) >> ==27734== by 0x3DF1C14804: _dl_runtime_resolve (in /lib64/ld-2.12.so) >> ==27734== by 0x40A41A: main (babel.cpp:318) >> ==27734== Address 0x7feff6a80 is not stack'd, malloc'd or (recently) free'd >> ==27734== >> ==27734== Invalid read of size 8 >> ==27734== at 0x3DF1C1721D: __longjmp (in /lib64/ld-2.12.so) >> ==27734== by 0x6163656400383966: ??? >> ==27734== by 0x6F6C2E34672D656D: ??? >> ==27734== by 0x6664736F2D0066: ??? >> ==27734== by 0x6664732E6F6B6F6A: ??? >> ==27734== by 0x70733D52455354FF: ??? >> ==27734== by 0x4E474F4C006C656E: ??? >> ==27734== by 0x656F70733D454D40: ??? >> ==27734== by 0x2F3D454D4F48006B: ??? >> ==27734== by 0x6F70732F656D6F67: ??? >> ==27734== by 0x3D48544150006C64: ??? >> ==27734== by 0x70732F656D6F682E: ??? >> ==27734== Address 0x7feff6a88 is not stack'd, malloc'd or (recently) free'd >> >> >> Happens on both Linux and OSX with gcc >= 4.8 >> Clues? >> >> -- >> David van der Spoel, Ph.D., Professor of Biology >> Dept. of Cell & Molec. Biol., Uppsala University. >> Box 596, 75124 Uppsala, Sweden. Phone: +46184714205. >> sp...@xray.bmc.uu.se http://folding.bmc.uu.se >> >> ------------------------------------------------------------------------------ >> Don't Limit Your Business. Reach for the Cloud. >> GigeNET's Cloud Solutions provide you with the tools and support that >> you need to offload your IT needs and focus on growing your business. >> Configured For All Businesses. Start Your Cloud Today. >> https://www.gigenetcloud.com/ >> _______________________________________________ >> OpenBabel-Devel mailing list >> OpenBabel-Devel@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/openbabel-devel -- David van der Spoel, Ph.D., Professor of Biology Dept. of Cell & Molec. Biol., Uppsala University. Box 596, 75124 Uppsala, Sweden. Phone: +46184714205. sp...@xray.bmc.uu.se http://folding.bmc.uu.se ------------------------------------------------------------------------------ Don't Limit Your Business. Reach for the Cloud. GigeNET's Cloud Solutions provide you with the tools and support that you need to offload your IT needs and focus on growing your business. Configured For All Businesses. Start Your Cloud Today. https://www.gigenetcloud.com/ _______________________________________________ OpenBabel-Devel mailing list OpenBabel-Devel@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/openbabel-devel
