Hello,
The message below did not seem to reach the mailing list [1]. Maybe that is
because of the attached file. I have now instead pasted the input of the
file at [2].
[1]
http://sourceforge.net/mailarchive/forum.php?forum_name=openbabel-discuss
[2] http://pastebin.com/puf0G2nS
--- Original message begin ---
I did everything again (now using revision 4514 and with your "make
bindings_java" trick) and it is now working in Mac OS X and in Linux. I had
to compile the generated .java files and create the .jar file myself even
though I saw some lines about that in some CMake config file. Thanks a lot,
Noel!
I have also tried building the Java bindings for Windows
(openbabel_java.dll). It builds fine, but something is different from the
file included in the Open Babel 2.3 release. My compiled version results in
an error message [1] after the System.loadLibrary("openbabel_java") call,
while the 2.3 version does not (the 2.3 version works fine but does of
course not include the new functionality). Any clues?
I compiled the Windows version using VS2010 and by following the
instructions at [2]. I attached the output from VS when compiling the
"Release" configuration.
[1] Exception in thread "main" java.lang.UnsatisfiedLinkError:
C:\Users\mkj\Documents\Eclipse\Thesis\lib\native\openbabel_java.dll: Can't
find dependent libraries
[2] http://openbabel.org/docs/2.3.0/Installation/install.html#windows-msvc
Regards,
Martin.
--- Original message end ---
Regards,
Martin.
On Sat, Jun 11, 2011 at 7:30 PM, Martin Kamp Jensen <
[email protected]> wrote:
> On Fri, Jun 10, 2011 at 3:54 PM, Noel O'Boyle <[email protected]>wrote:
>
>> > Using revision 4513 I have no luck getting a .jar file generated. I
>> executed
>> > the following commands in /Users/mkj/openbabel/build on Mac OS X 10.6.7:
>> >>
>> >> cmake ../trunk -DCMAKE_INSTALL_PREFIX=/Users/mkj/openbabel/install
>> >> -DEIGEN2_INCLUDE_DIR=/Users/mkj/Downloads/eigen-eigen-0938af7840b0 -
>> >>
>> >> DRUN_SWIG=ON -DSWIG_EXECUTABLE=/Users/mkj/openbabel/swig/bin/swig
>> >>
>> >> make -j 2
>> >
>> >
>> > This completes successfully, but there is no .jar files in
>> openbabel/trunk
>> > or openbabel/build. I then tried adding the following:
>> >>
>> >> -DJAVA_BINDINGS=ON
>> >
>> > This results in the following error:
>> >>>
>> >>> [ 99%] Built target test_unitcell
>> >>>
>> >>> [ 99%] Generating
>> >>> /Users/mkj/openbabel/trunk/scripts/java/openbabel-java.cpp
>> >>>
>> >>> /Users/mkj/openbabel/trunk/include/openbabel/isomorphism.h:159:
>> Warning
>> >>> 325: Nested class not currently supported (Functor ignored)
>> >>>
>> >>> javac: file not found: org/openbabel/*.java
>> >>>
>> >>> Usage: javac <options> <source files>
>> >>>
>> >>> use -help for a list of possible options
>> >>>
>>
>> I spent a little while trying to fix this but was unable to do so.
>> It's something weird with CMake. The workaround is to rerun make for
>> the bindings, e.g. with "make bindings_java". It should work the
>> second time.
>>
>> If OBConformerSearch is not found, it's likely that Eigen2 was not
>> found. See the install instructions and look at the output of running
>> CMake.
>>
>
> I did everything again (now using revision 4514 and with your "make
> bindings_java" trick) and it is now working in Mac OS X and in Linux. I had
> to compile the generated .java files and create the .jar file myself even
> though I saw some lines about that in some CMake config file. Thanks a lot,
> Noel!
>
> I have also tried building the Java bindings for Windows
> (openbabel_java.dll). It builds fine, but something is different from the
> file included in the Open Babel 2.3 release. My compiled version results in
> an error message [1] after the System.loadLibrary("openbabel_java") call,
> while the 2.3 version does not (the 2.3 version works fine but does of
> course not include the new functionality). Any clues?
>
> I compiled the Windows version using VS2010 and by following the
> instructions at [2]. I attached the output from VS when compiling the
> "Release" configuration.
>
> [1] Exception in thread "main" java.lang.UnsatisfiedLinkError:
> C:\Users\mkj\Documents\Eclipse\Thesis\lib\native\openbabel_java.dll: Can't
> find dependent libraries
> [2] http://openbabel.org/docs/2.3.0/Installation/install.html#windows-msvc
>
> Regards,
> Martin.
>
>
>>
>> - Noel
>>
>
>
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