Dear Noel,
Yes, you are right! The conflict was with Avogadro. When I removed it
from the path, everything works just fine!
Thanks again.
Best wishes,
Michal
On 7 October 2013 19:07, Noel O'Boyle <baoille...@gmail.com> wrote:
> Aha. The conflict is with Avogadro. It includes openbabel-2.dll.
> Whichever one is first on the path wins. Just remove Avogadro's bin
> from the PATH. I have Avogadro installed and it works fine without it
> being on the PATH.
>
> - Noel
>
> On 7 October 2013 18:47, Michal Krompiec <michal.kromp...@gmail.com> wrote:
>> Dear Noel,
>> Yes, but the system path is OK:
>> C:\Users\Michal>echo %path%
>> C:\Program Files\Common Files\Microsoft Shared\Windows Live;C:\Program Files
>> (x8
>> 6)\Common Files\Microsoft Shared\Windows Live;C:\Windows\system32;C:\
>> Windows;C:\
>> Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0\;C:\Program
>> Fil
>> es (x86)\EgisTec MyWinLocker\x86;C:\Program Files (x86)\EgisTec
>> MyWinLocker\x64;
>> C:\Program Files (x86)\ATI Technologies\ATI.ACE\Core-Static;C:\Program Files
>> (x8
>> 6)\Windows Live\Shared;C:\Program Files (x86)\Common Files\MDL
>> Shared\ISIS;c:\Pr
>> ogram Files (x86)\Microsoft SQL Server\90\Tools\binn\;C:\Program Files
>> (x86)\Qui
>> ckTime\QTSystem\;C:\Program Files (x86)\Avogadro\bin;C:\Program Files
>> (x86)\Open
>> Babel-2.3.2;C:\Program Files (x86)\Mozilla Firefox
>>
>> whereas python's path is different:
>>>>> import sys; print(sys.path)
>> ['', 'C:\\Python27\\Lib\\idlelib',
>> 'C:\\Windows\\system32\\python27.zip', 'C:\\Python27\\DLLs',
>> 'C:\\Python27\\lib', 'C:\\Python27\\lib\\plat-win',
>> 'C:\\Python27\\lib\\lib-tk', 'C:\\Python27',
>> 'C:\\Python27\\lib\\site-packages']
>>>>>
>>
>> Why?
>> Best wishes,
>> Michal
>>
>> On 7 October 2013 17:12, Noel O'Boyle <baoille...@gmail.com> wrote:
>>> If that solved your problem, then your problem was the PATH. You can
>>> check the path that Python sees with "import sys; print(sys.path)".
>>>
>>> If the Open Babel directory is on the PATH, then the only thing I can
>>> think of is that you opened a command prompt window before the PATH
>>> was updated.
>>>
>>> If want to go ahead with your workaround, copy the .obf files also and
>>> see if it works.
>>>
>>> - Noel
>>>
>>> On 7 October 2013 16:11, Michal Krompiec <michal.kromp...@gmail.com> wrote:
>>>> Hello, this problem is solved (by copying openbabel's dlls to python
>>>> directory. I'm able to import openbabel now, but when I try to import
>>>> pybel, I get the following error:
>>>> Traceback (most recent call last):
>>>> File "<pyshell#1>", line 1, in <module>
>>>> import pybel
>>>> File "C:\Python33\lib\site-packages\pybel.py", line 69, in <module>
>>>> informats = _formatstodict(_obconv.GetSupportedInputFormat())
>>>> File "C:\Python33\lib\site-packages\pybel.py", line 65, in _formatstodict
>>>> broken = [(x,y.strip()) for x,y in broken]
>>>> File "C:\Python33\lib\site-packages\pybel.py", line 65, in <listcomp>
>>>> broken = [(x,y.strip()) for x,y in broken]
>>>> ValueError: need more than 1 value to unpack
>>>>
>>>> Can anybody help??
>>>> Thanks,
>>>> Michal Krompiec
>>>>
>>>> On 7 October 2013 12:37, Michal Krompiec <michal.kromp...@gmail.com> wrote:
>>>>> Hello, I need urgent help with the openbabel python library. I can't
>>>>> get it to work (on 3 different Windows 7 computers).
>>>>> I installed OpenBabel GUI 2.3.2 first, then Python 3.3 32-bit, then
>>>>> OpenBabel python bindings 1.8 for python 3.3.
>>>>>
>>>>> When I try to import openabel or pybel, I get the following error message:
>>>>>>>> import pybel
>>>>> Traceback (most recent call last):
>>>>> File "<pyshell#0>", line 1, in <module>
>>>>> import pybel
>>>>> File "C:\Python33\lib\site-packages\pybel.py", line 52, in <module>
>>>>> import openbabel as ob
>>>>> File "C:\Python33\lib\site-packages\openbabel.py", line 37, in <module>
>>>>> _openbabel = swig_import_helper()
>>>>> File "C:\Python33\lib\site-packages\openbabel.py", line 33, in
>>>>> swig_import_helper
>>>>> _mod = imp.load_module('_openbabel', fp, pathname, description)
>>>>> File "C:\Python33\lib\imp.py", line 183, in load_module
>>>>> return load_dynamic(name, filename, file)
>>>>> ImportError: DLL load failed: The specified module could not be found.
>>>>>
>>>>> What to do? openbabel directory is in the path, copying openbabel's
>>>>> dlls into windows/system doesn't help.
>>>>> I tried again with Python 2.7, but got exactly the same problem.
>>>>> I know that some people reported this issue previously, but their
>>>>> solutions don't work for me.
>>>>> Thanks in advance,
>>>>> Michal Krompiec
>>>>
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