I finally figured out how to call the the OBOp class with the following
code:
my $genOp = Chemistry::OpenBabel::OBOp::FindType("gen3d");
$genOp->Do($obMol);
However, this brought up a new problem, where I get the error message,
"Segmentation fault." This appears to be an issue with the binding, if I'm
not mistaken. The version of OpenBabel I'm using now is 2.2.3, not 2.3.2,
and the system administrator on our cluster is hesitant in updating, as it
is very troublesome. Has anyone experienced this error before? Would anyone
know if this issue is resolved in later versions? Thank you very much for
any insight.
Wallace
On Thu, Nov 14, 2013 at 4:30 PM, Geoffrey Hutchison <
geoff.hutchi...@gmail.com> wrote:
> > I'm using version 2.2.3 of Open Babel.
>
> I don't remember, but it's entirely possible OBOp is not included in the
> Perl wrapper for that version. It's now over 4 years old.
>
> The latest version is 2.3.2:
> http://openbabel.org/wiki/Install
>
> Hope that helps,
> -Geoff
--
Wallace Chan
Zhang Lab
Department of Biological Chemistry
University of Michigan
walla...@umich.edu
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