Dear all,
we just published the Protein-Ligand Interaction Profiler (PLIP), a web
service and open source command line tool for characterizing and
visualizing all relevant non-covalent interactions between proteins and
ligands in PDB structures.
Web Service: https://projects.biotec.tu-dresden.de/plip-web
<https://www.researchgate.net/go.Deref.html?url=https%3A%2F%2Fprojects.biotec.tu-dresden.de%2Fplip-web>
Code: _https://github.com/ssalentin/plip
_Publication:
_http://nar.oxfordjournals.org/content/early/2015/04/14/nar.gkv315
_
The code is written in Python and makes use of the Open Babel / Pybel
library for fast reading of PDB files, internal representation of
molecules and several chemoinformatic calculations. Thanks to all Open
Babel contributors for providing this great open source toolbox!
Best
Sebastian
--
Sebastian Salentin, PhD student
Bioinformatics Group
Technische Universität Dresden
Biotechnology Center (BIOTEC)
Tatzberg 47/49
01307 Dresden, Germany
------------------------------------------------------------------------------
BPM Camp - Free Virtual Workshop May 6th at 10am PDT/1PM EDT
Develop your own process in accordance with the BPMN 2 standard
Learn Process modeling best practices with Bonita BPM through live exercises
http://www.bonitasoft.com/be-part-of-it/events/bpm-camp-virtual- event?utm_
source=Sourceforge_BPM_Camp_5_6_15&utm_medium=email&utm_campaign=VA_SF
_______________________________________________
OpenBabel-discuss mailing list
OpenBabel-discuss@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
