Dear All, I am having trouble with creating a fast search index. My command and output are as follows:
*Command* babel glass.sdf -ofs *Output* This will prepare an index of glass.sdf and may take some time... It took 55 seconds 41258 molecules converted 15 audit log messages The problem lies in the fact that glass.sdf has 186,342 molecules, while only 41,258 molecules succeeded in being converted. This is puzzling because this has always worked for me in the past. I speculated that I may have messed up the dollar sign formatting in molecule separation, but upon inspection, the format seems fine. This has been driving me crazy and any help given will be much appreciated. Thanks! -- Wallace Chan PhD Candidate Zhang Lab Department of Biological Chemistry University of Michigan walla...@umich.edu
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