I have eigen3 installed. If you look at my gcc install command. I had to
add a path for it. It's there and functional.
On Oct 5, 2016 10:55, "Noel O'Boyle" <baoille...@gmail.com> wrote:
> This part is covered in the docs at least. You are missing eigen.
>
> On 5 Oct 2016 6:02 p.m., "Jason Ott" <jott...@ucr.edu> wrote:
>
>> That worked like a charm! Thanks. So now I have been trying to include
>> said java bindings in my project...
>>
>> I added the openbabel.jar file to my classpath. So I can import and all
>> classes are resolved and looking good! However, when I try running the
>> basic program from the tutorial
>> <http://openbabel.org/docs/dev/UseTheLibrary/Java.html#quickstart-example> my
>> System.loadLibrary("openbabel_java") throws a segfault from native up to
>> my java.
>>
>> I tried to follow the readme in the /scripts/java/ directory, but I
>> cannot get the very first compilation step to work. But I noticed that
>> under [install_path]/lib/ there is both the openbabel.jar and
>> libopenbabel_java.jnilib, which should be enough to get the thing working.
>>
>> When I follow that readme in /scripts/java/ I get the following error:
>>
>> openbabel-java.cpp:9941:25: error: no member named 'DiverseConfGen' in
>> 'OpenBabel::OBForceField'
>>
>> result = (int)(arg1)->DiverseConfGen(arg2,arg3,arg4,arg5); jresult =
>> (jint)result; return jresult; }
>>
>> ~~~~~~ ^
>>
>> openbabel-java.cpp:9946:25: error: no member named 'DiverseConfGen' in
>> 'OpenBabel::OBForceField'
>>
>> result = (int)(arg1)->DiverseConfGen(arg2,arg3,arg4); jresult =
>> (jint)result; return jresult; }
>>
>> ~~~~~~ ^
>>
>> openbabel-java.cpp:9950:54: error: no member named 'DiverseConfGen' in
>> 'OpenBabel::OBForceField'
>>
>> arg3 = (unsigned int)jarg3; result =
>> (int)(arg1)->DiverseConfGen(arg2,arg3);
>> jresult = (jint)result; return jresult; }
>>
>> ~~~~~~ ^
>>
>> openbabel-java.cpp:9954:25: error: no member named 'DiverseConfGen' in
>> 'OpenBabel::OBForceField'
>>
>> result = (int)(arg1)->DiverseConfGen(arg2); jresult = (jint)result;
>> return jresult; }
>>
>> ~~~~~~ ^
>>
>> 4 errors generated.
>>
>>
>> I compile with the following command: g++ -c -fpic openbabel-java.cpp -I
>> ../../include/ -I /Library/Java/JavaVirtualMachi
>> nes/jdk1.8.0_60.jdk/Contents/Home/include/ -I
>> /Library/Java/JavaVirtualMachines/jdk1.8.0_60.jdk/Contents/Home/include/darwin/
>> -I /opt/local/include/eigen3/
>>
>>
>> Any support would be appreciated. Thanks.
>>
>> On Wed, Oct 5, 2016 at 6:48 AM, Noel O'Boyle <baoille...@gmail.com>
>> wrote:
>>
>>> Ah -- looks like we missed something in the release. The Swig bindings
>>> should have been included. As it is, you will need to install swig,
>>> and specify -DSWIG_EXECUTABLE=whatever.
>>>
>>> - Noel
>>>
>>> On 5 October 2016 at 01:10, Jason Ott <jott...@ucr.edu> wrote:
>>> > Hello all!
>>> >
>>> > I have been trying all day to build the java bindings for open babel.
>>> I
>>> > have:
>>> >
>>> > installed through mac ports,
>>> > downloaded source and compiled using the following flags:
>>> >
>>> > -DCMAKE_INSTALL_PREFIX=~/Applications/openbabel -DJAVA_BINDINGS=ON
>>> > -DBUILD_GUI=OFF
>>> >
>>> > I am running MacOS Sierra. No special configs or anything. The java
>>> > bindings are never generated in the openbabel-openbabel-2.4.0/scri
>>> pts/java/
>>> > folder or anywhere in the installation location.
>>> >
>>> > When I do the "cmake ./ -DCMAKE_INSTALL_PREFIX=~/Appli
>>> cations/openbabel
>>> > -DJAVA_BINDINGS=ON -DBUILD_GUI=OFF" I get the following output:
>>> >
>>> > -- Using included inchi library.
>>> > -- Could NOT find wxWidgets (missing: wxWidgets_LIBRARIES
>>> > wxWidgets_INCLUDE_DIRS)
>>> > -- Checking available shared pointer...
>>> > -- Use std::shared_ptr in memory
>>> > -- Cairo found. PNG output will be supported.
>>> > -- GUI will not be built
>>> > -- Could NOT find SWIG (missing: SWIG_EXECUTABLE SWIG_DIR)
>>> > -- Could NOT find SWIG (missing: SWIG_EXECUTABLE SWIG_DIR) (Required
>>> is at
>>> > least version "2.0")
>>> > -- SWIG 2.0 NOT found
>>> > -- Configuring done
>>> > -- Generating done
>>> > -- Build files have been written to:
>>> > /Users/jason/Desktop/openbabel-openbabel-2-4-0
>>> >
>>> > So that tells me that that java AND python bindings should exist
>>> *somewhere*
>>> > but they don't.
>>> >
>>> > Thanks,
>>> >
>>> > Jason
>>> >
>>> > ------------------------------------------------------------
>>> ------------------
>>> > Check out the vibrant tech community on one of the world's most
>>> > engaging tech sites, SlashDot.org! http://sdm.link/slashdot
>>> > _______________________________________________
>>> > OpenBabel-discuss mailing list
>>> > OpenBabel-discuss@lists.sourceforge.net
>>> > https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
>>> >
>>>
>>
>>
------------------------------------------------------------------------------
Check out the vibrant tech community on one of the world's most
engaging tech sites, SlashDot.org! http://sdm.link/slashdot
_______________________________________________
OpenBabel-discuss mailing list
OpenBabel-discuss@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/openbabel-discuss
