Hello. I'm a doctoral student and I'm using openbabel for my thesis. Currently, I want to prepare a ligand for my molecular docking. For this, I take the ligand in SMILES format and converted it to SDF or MOL format. With scripts of the tutorial:
PROMPT> obabel -ismi 'outputfile.smi' -osdf 'mymols.sdf' As a result, I have an error and I'm not understood why ============================== *** Open Babel Error in OpenAndSetFormat Cannot open /home/virginia/Escritorio/Doctorado/LideB/Ácido ============================== *** Open Babel Error in OpenAndSetFormat Cannot open Zolendrónico/SMILE ============================== *** Open Babel Error in OpenAndSetFormat Cannot open /home/virginia/Escritorio/Doctorado/LideB/Ácido ============================== *** Open Babel Error in OpenAndSetFormat Cannot open Zolendrónico/SDF 0 molecules converted I hope that somebody helps me. Thank's Virginia.
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