So...just delete all files related to OpenBabel (e.g. search your computer for all files with openbabel in their path) and recompile 2.2.3 (not 2.2.3b). Then you can be sure you have only a single version. In future, you should consider installing locally rather than globally to avoid this problem.
- Noel On 8 April 2010 20:17, Chirag Patel <[email protected]> wrote: > Hello Noel, All, > Thanks for your response. > > I attempted to compile and install myself (v 2.2.3b), but this was after I > had installed the binary; how can I verify if I have only a single version of > OpenBabel? > > Chirag > > > On Apr 7, 2010, at 4:29 AM, Noel O'Boyle wrote: > >> Hello Chirag, >> >> What version of OpenBabel are you using? Did you compile and install >> it yourself? >> >> Can you verify that you only have a single version of OpenBabel on >> your system and that all of the files, openbabel.py, _openbabel.so, >> and so forth come from that version? The usual problem is that there >> is a mixup between different versions due to incorrectly set >> environment variables. >> >> - Noel >> >> (please cc to list) >> >> On 2 April 2010 23:42, Chirag Patel <[email protected]> wrote: >>> Hello, >>> I am having trouble using the python bindings. I am using max OS 10.6.2 >>> and python 2.6.1: >>> >>> Python 2.6.1 (r261:67515, Jul 7 2009, 23:51:51) >>> [GCC 4.2.1 (Apple Inc. build 5646)] on darwin >>> Type "help", "copyright", "credits" or "license" for more information. >>>>>> import openbabel >>> Traceback (most recent call last): >>> File "<stdin>", line 1, in <module> >>> File "/Library/Python/2.6/site-packages/openbabel.py", line 36, in <module> >>> _openbabel = swig_import_helper() >>> File "/Library/Python/2.6/site-packages/openbabel.py", line 35, in >>> swig_import_helper >>> return _mod >>> UnboundLocalError: local variable '_mod' referenced before assignment >>> >>>>>> import _openbabel >>> Traceback (most recent call last): >>> File "<stdin>", line 1, in <module> >>> ImportError: dlopen(/Library/Python/2.6/site-packages/_openbabel.so, 2): >>> Symbol not found: __ZN9OpenBabel10obErrorLogE >>> Referenced from: /Library/Python/2.6/site-packages/_openbabel.so >>> Expected in: flat namespace >>> in /Library/Python/2.6/site-packages/_openbabel.so >>> >>> >>> any ideas? I apologize if this is a repeat issue and I googled around to >>> no avail... >>> >>> >>> Chirag >>> ------------------------------------------------------------------------------ >>> Download Intel® Parallel Studio Eval >>> Try the new software tools for yourself. Speed compiling, find bugs >>> proactively, and fine-tune applications for parallel performance. >>> See why Intel Parallel Studio got high marks during beta. >>> http://p.sf.net/sfu/intel-sw-dev >>> _______________________________________________ >>> OpenBabel-scripting mailing list >>> [email protected] >>> https://lists.sourceforge.net/lists/listinfo/openbabel-scripting >>> > > ------------------------------------------------------------------------------ Download Intel® Parallel Studio Eval Try the new software tools for yourself. Speed compiling, find bugs proactively, and fine-tune applications for parallel performance. See why Intel Parallel Studio got high marks during beta. http://p.sf.net/sfu/intel-sw-dev _______________________________________________ OpenBabel-scripting mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/openbabel-scripting
