hi johannes, i helped write some of the (now mostly outdated) code in the agi-bio repo. i've been following this conversation but have been too busy working on a gene annotation service that includes a new version of the atomspace representation and import scripts for the gene ontology that we are contributing to the snet beta release to chime in. once the snet service version is finalized we will update the agi-bio repo with the new code so you can access it there or on the snet repo for the service. unfortunately i haven't had a chance to look over what you've done so far to compare but hopefully you'll be willing to discuss it with us in the singularity net bio community forum we will launch with the beta.
also, unless i missed it, nil forgot to mention that he wrote an import script for sumo <https://github.com/opencog/external-tools/tree/master/SUMO_importer>, which i'm assuming is the Suggested Upper Merged Ontology <http://www.adampease.org/OP/> (there isn't a direct reference in the readme). thanks for sharing! On Monday, January 14, 2019 at 8:49:02 AM UTC-5, Johannes Castner wrote: > > Dear opencog friends and fellow hackers and people who are interested in > ontologies etc, here is a python script I've been working on that parses > the ENVO.obo ontology and prints a version of it to Scheme. > I could definitely use some help with improvements and I'll be vigorously > working on it myself. Here is the first draft: > https://github.com/jac2130/obo_to_Atom_Space/blob/master/ENVO_scm.py > <https://www.google.com/url?q=https%3A%2F%2Fgithub.com%2Fjac2130%2Fobo_to_Atom_Space%2Fblob%2Fmaster%2FENVO_scm.py&sa=D&sntz=1&usg=AFQjCNHzu-koZ1TjyItKH4bY7WJNmNRMsg> > > Basically the idea is to generalize it and build new parsers and scheme > writers that parse other ontologies but that follow the same basic logic. > > Hope that it is useful! > > johannes > -- You received this message because you are subscribed to the Google Groups "opencog" group. To unsubscribe from this group and stop receiving emails from it, send an email to opencog+unsubscr...@googlegroups.com. To post to this group, send email to opencog@googlegroups.com. Visit this group at https://groups.google.com/group/opencog. To view this discussion on the web visit https://groups.google.com/d/msgid/opencog/d9b4b3a2-d6fe-4fe4-b571-9fae041f8861%40googlegroups.com. For more options, visit https://groups.google.com/d/optout.
