Upgrade to release 3.1.0:
- Fix using bytes as names for :meth:`~Group.create_dataset` and
 :meth:`~Group.create_virtual_dataset`.
- Fix writing data as a list to a dataset with a sub-array data
type.
- Preserve endianess in Cython dataset Reader
- If pytest is missing pytest-mpi then it will now fail
immediately with a clear warning message
- Fix a test which was failing on big-endian systems
Signed-off-by: Leon Anavi <leon.an...@konsulko.com>
---
.../0001-cross-compiling-support.patch | 47 -------------------
.../0001-setup.py-Fix-numpy-version.patch | 30 ++++++++++++
...1-setup_build.py-avoid-absolute-path.patch | 13 ++---
...3-h5py_2.10.0.bb => python3-h5py_3.1.0.bb} | 5 +-
4 files changed, 39 insertions(+), 56 deletions(-)
delete mode 100644
meta-python/recipes-devtools/python/python3-h5py/0001-cross-compiling-support.patch
create mode 100644
meta-python/recipes-devtools/python/python3-h5py/0001-setup.py-Fix-numpy-version.patch
rename meta-python/recipes-devtools/python/{python3-h5py_2.10.0.bb =>
python3-h5py_3.1.0.bb} (78%)
diff --git
a/meta-python/recipes-devtools/python/python3-h5py/0001-cross-compiling-support.patch
b/meta-python/recipes-devtools/python/python3-h5py/0001-cross-compiling-support.patch
deleted file mode 100644
index 8c0b91432..000000000
---
a/meta-python/recipes-devtools/python/python3-h5py/0001-cross-compiling-support.patch
+++ /dev/null
@@ -1,47 +0,0 @@
-From 364fd0906efa349ea44a761820408dcf6b2b8726 Mon Sep 17 00:00:00 2001
-From: Hongxu Jia <hongxu....@windriver.com>
-Date: Tue, 29 Jan 2019 17:08:32 +0800
-Subject: [PATCH] cross compiling support
-
-Remove useless dirs
-
-Upstream-Status: Inappropriate [oe specific]
-
-Signed-off-by: Hongxu Jia <hongxu....@windriver.com>
-Signed-off-by: Leon Anavi <leon.an...@konsulko.com>
----
- setup_build.py | 4 ----
- setup_configure.py | 2 +-
- 2 files changed, 1 insertion(+), 5 deletions(-)
-
-diff --git a/setup_build.py b/setup_build.py
-index c0e9a28c..ffd3bef7 100644
---- a/setup_build.py
-+++ b/setup_build.py
-@@ -55,10 +55,6 @@ if sys.platform.startswith('win'):
- ('_HDF5USEDLL_', None),
- ('H5_BUILT_AS_DYNAMIC_LIB', None)
- ])
--else:
-- FALLBACK_PATHS['include_dirs'].extend(['/opt/local/include',
'/usr/local/include'])
-- FALLBACK_PATHS['library_dirs'].extend(['/opt/local/lib',
'/usr/local/lib'])
--
-
- class h5py_build_ext(build_ext):
-
-diff --git a/setup_configure.py b/setup_configure.py
-index 5576775e..75f4141e 100644
---- a/setup_configure.py
-+++ b/setup_configure.py
-@@ -206,7 +206,7 @@ def autodetect_version(hdf5_dir=None):
- default_path = 'libhdf5.so'
- regexp = re.compile(r'^libhdf5.so')
-
-- libdirs = ['/usr/local/lib', '/opt/local/lib']
-+ libdirs = []
- try:
- if pkgconfig.exists("hdf5"):
- libdirs.extend(pkgconfig.parse("hdf5")['library_dirs'])
---
-2.17.1
-
diff --git
a/meta-python/recipes-devtools/python/python3-h5py/0001-setup.py-Fix-numpy-version.patch
b/meta-python/recipes-devtools/python/python3-h5py/0001-setup.py-Fix-numpy-version.patch
new file mode 100644
index 000000000..57037a91a
--- /dev/null
+++
b/meta-python/recipes-devtools/python/python3-h5py/0001-setup.py-Fix-numpy-version.patch
@@ -0,0 +1,30 @@
+From 7c88e3762c2381a507dc86b90152216abe79a804 Mon Sep 17 00:00:00 2001
+From: Leon Anavi <leon.an...@konsulko.com>
+Date: Wed, 3 Feb 2021 17:23:29 +0200
+Subject: [PATCH] setup.py: Fix numpy version
+
+Fix numpy version to ensure bitbake will find the pip package.
+
+Upstream-Status: Inappropriate [oe specific]
+
+Signed-off-by: Leon Anavi <leon.an...@konsulko.com>
+---
+ setup.py | 2 +-
+ 1 file changed, 1 insertion(+), 1 deletion(-)
+
+diff --git a/setup.py b/setup.py
+index 7dbe5835..8fc15bc8 100755
+--- a/setup.py
++++ b/setup.py
+@@ -30,7 +30,7 @@ NUMPY_MIN_VERSIONS = [
+ ('1.12', "=='3.6'"),
+ ('1.14.5', "=='3.7'"),
+ ('1.17.5', "=='3.8'"),
+- ('1.19.3', ">='3.9'"),
++ ('1.19.5', ">='3.9'"),
+ ]
+
+ # these are required to use h5py
+--
+2.17.1
+
diff --git
a/meta-python/recipes-devtools/python/python3-h5py/0001-setup_build.py-avoid-absolute-path.patch
b/meta-python/recipes-devtools/python/python3-h5py/0001-setup_build.py-avoid-absolute-path.patch
index da95ee7af..05c126e54 100644
---
a/meta-python/recipes-devtools/python/python3-h5py/0001-setup_build.py-avoid-absolute-path.patch
+++
b/meta-python/recipes-devtools/python/python3-h5py/0001-setup_build.py-avoid-absolute-path.patch
@@ -1,6 +1,6 @@
-From b5d5a7efc7aaa2be830731001ed17c5b71bcefb1 Mon Sep 17 00:00:00 2001
+From 86a2c95941a3854fda763037a16b5b22ec6f15e9 Mon Sep 17 00:00:00 2001
From: Mingli Yu <mingli...@windriver.com>
-Date: Fri, 29 Jan 2021 02:33:06 +0000
+Date: Thu, 28 Jan 2021 18:44:10 -0800
Subject: [PATCH] setup_build.py: avoid absolute path
Prevent absolute path from ending up in the egg-info SOURCES.txt.
@@ -8,15 +8,16 @@ Prevent absolute path from ending up in the egg-info
SOURCES.txt.
Upstream-Status: Submitted [https://github.com/h5py/h5py/pull/1803]
Signed-off-by: Mingli Yu <mingli...@windriver.com>
+Signed-off-by: Leon Anavi <leon.an...@konsulko.com>
---
setup_build.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/setup_build.py b/setup_build.py
-index ffd3bef..fb196c0 100644
+index 3c7c7adb..d824bdda 100644
--- a/setup_build.py
+++ b/setup_build.py
-@@ -20,7 +20,7 @@ import api_gen
+@@ -21,7 +21,7 @@ from setup_configure import BuildConfig
def localpath(*args):
@@ -24,7 +25,7 @@ index ffd3bef..fb196c0 100644
+ return op.join(*args)
- MODULES = ['defs','_errors','_objects','_proxy', 'h5fd', 'h5z',
+ MODULES = ['defs', '_errors', '_objects', '_proxy', 'h5fd', 'h5z',
--
-2.29.2
+2.17.1
diff --git a/meta-python/recipes-devtools/python/python3-h5py_2.10.0.bb
b/meta-python/recipes-devtools/python/python3-h5py_3.1.0.bb
similarity index 78%
rename from meta-python/recipes-devtools/python/python3-h5py_2.10.0.bb
rename to meta-python/recipes-devtools/python/python3-h5py_3.1.0.bb
index b812b323f..03ae4c9db 100644
--- a/meta-python/recipes-devtools/python/python3-h5py_2.10.0.bb
+++ b/meta-python/recipes-devtools/python/python3-h5py_3.1.0.bb
@@ -4,12 +4,11 @@ SECTION = "devel/python"
LICENSE = "BSD-3-Clause"
LIC_FILES_CHKSUM = "file://LICENSE;md5=113251d71fb0384712c719b567261c5c"
-SRC_URI[md5sum] = "504b595237409ab766fbbe568e60a080"
-SRC_URI[sha256sum] =
"84412798925dc870ffd7107f045d7659e60f5d46d1c70c700375248bf6bf512d"
+SRC_URI[sha256sum] =
"1e2516f190652beedcb8c7acfa1c6fa92d99b42331cbef5e5c7ec2d65b0fc3c2"
SRC_URI_append = " \
- file://0001-cross-compiling-support.patch \
file://0001-setup_build.py-avoid-absolute-path.patch \
+ file://0001-setup.py-Fix-numpy-version.patch \
"
inherit pypi setuptools3
--
2.17.1
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