Due to commit [1] applied in hdf5 (1.13.2), import hdf5 failed |>>> import h5py |Traceback (most recent call last): | File "<stdin>", line 1, in <module> | File "/usr/lib/python3.10/site-packages/h5py/__init__.py", line 56, in <module> | from . import h5a, h5d, h5ds, h5f, h5fd, h5g, h5r, h5s, h5t, h5p, h5z, h5pl | File "h5py/h5fd.pyx", line 220, in init h5py.h5fd |RuntimeError: Wrong file driver version # (wrong file driver version #)
Initial driver version to fix the error [1] https://github.com/HDFGroup/hdf5/commit/42b767fc67ad1e13735e3cee2077f2e108f9463e Signed-off-by: Hongxu Jia <hongxu....@windriver.com> --- .../0001-fix-wrong-file-driver-version.patch | 52 +++++++++++++++++++ .../python/python3-h5py_3.7.0.bb | 1 + 2 files changed, 53 insertions(+) create mode 100644 meta-python/recipes-devtools/python/python3-h5py/0001-fix-wrong-file-driver-version.patch diff --git a/meta-python/recipes-devtools/python/python3-h5py/0001-fix-wrong-file-driver-version.patch b/meta-python/recipes-devtools/python/python3-h5py/0001-fix-wrong-file-driver-version.patch new file mode 100644 index 000000000..deb976755 --- /dev/null +++ b/meta-python/recipes-devtools/python/python3-h5py/0001-fix-wrong-file-driver-version.patch @@ -0,0 +1,52 @@ +From 5b0b1d0b941ba338d449f9261bdf4cb2b679d048 Mon Sep 17 00:00:00 2001 +From: Hongxu Jia <hongxu....@windriver.com> +Date: Tue, 20 Sep 2022 02:53:11 -0700 +Subject: [PATCH] fix wrong file driver version + +Due to commit [1] applied in hdf5 (1.13.2), import hdf5 failed + +|>>> import h5py +|Traceback (most recent call last): +| File "<stdin>", line 1, in <module> +| File "/usr/lib/python3.10/site-packages/h5py/__init__.py", line 56, in <module> +| from . import h5a, h5d, h5ds, h5f, h5fd, h5g, h5r, h5s, h5t, h5p, h5z, h5pl +| File "h5py/h5fd.pyx", line 220, in init h5py.h5fd +|RuntimeError: Wrong file driver version # (wrong file driver version #) + +Initial driver version to fix the error + +[1] https://github.com/HDFGroup/hdf5/commit/42b767fc67ad1e13735e3cee2077f2e108f9463e + +Signed-off-by: Hongxu Jia <hongxu....@windriver.com> +--- + h5py/api_types_hdf5.pxd | 1 + + h5py/h5fd.pyx | 1 + + 2 files changed, 2 insertions(+) + +diff --git a/h5py/api_types_hdf5.pxd b/h5py/api_types_hdf5.pxd +index 6977f1a7..312fdaa0 100644 +--- a/h5py/api_types_hdf5.pxd ++++ b/h5py/api_types_hdf5.pxd +@@ -237,6 +237,7 @@ cdef extern from "hdf5.h": + + # Class information for each file driver + ctypedef struct H5FD_class_t: ++ unsigned version; + const char *name + haddr_t maxaddr + H5F_close_degree_t fc_degree +diff --git a/h5py/h5fd.pyx b/h5py/h5fd.pyx +index 04aff077..d41953d0 100644 +--- a/h5py/h5fd.pyx ++++ b/h5py/h5fd.pyx +@@ -191,6 +191,7 @@ cdef herr_t H5FD_fileobj_flush(H5FD_fileobj_t *f, hid_t dxpl, hbool_t closing) e + cdef H5FD_class_t info + memset(&info, 0, sizeof(info)) + ++info.version = 0x01 + info.name = 'fileobj' + info.maxaddr = libc.stdint.SIZE_MAX - 1 + info.fc_degree = H5F_CLOSE_WEAK +-- +2.37.1 + diff --git a/meta-python/recipes-devtools/python/python3-h5py_3.7.0.bb b/meta-python/recipes-devtools/python/python3-h5py_3.7.0.bb index 07128bb03..ce4f05dbe 100644 --- a/meta-python/recipes-devtools/python/python3-h5py_3.7.0.bb +++ b/meta-python/recipes-devtools/python/python3-h5py_3.7.0.bb @@ -8,6 +8,7 @@ SRC_URI[sha256sum] = "3fcf37884383c5da64846ab510190720027dca0768def34dd8dcb659db SRC_URI:append = " \ file://0001-setup_build.py-avoid-absolute-path.patch \ + file://0001-fix-wrong-file-driver-version.patch \ " inherit pkgconfig pypi setuptools3 -- 2.27.0
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