On Wed, Dec 16, 2009 at 03:36:47PM -0800, Sherry Moore wrote:
Strange, somehow I have the feeling, that it is a libpicl problem:
ldd seems to pick up the right libs:
ldd bin/exec/R
libR.so => /export/scratch/elkner/build/R-2.10.1/lib/libR.so
libRblas.so => /export/scratch/elkner/build/R-2.10.1/lib/libRblas.so
libc.so.1 => /lib/64/libc.so.1
libfui.so.2 => /local/apps/studio12/lib/amd64/libfui.so.2
libfai.so.1 => /local/apps/studio12/lib/amd64/libfai.so.1
libfsu.so.1 => /local/apps/studio12/lib/amd64/libfsu.so.1
libsunmath.so.1 => /local/apps/studio12/lib/amd64/libsunmath.so.1
libmtsk.so.1 => /lib/64/libmtsk.so.1
libm.so.2 => /lib/64/libm.so.2
libreadline.so.5 => /local/usr/lib/64/libreadline.so.5
libcurses.so.1 => /lib/64/libcurses.so.1
libpcre.so.0 => /local/usr/lib/64/libpcre.so.0
libbz2.so.1 => /usr/lib/64/libbz2.so.1
libz.so.1 => /lib/64/libz.so.1
libnsl.so.1 => /lib/64/libnsl.so.1
libsocket.so.1 => /lib/64/libsocket.so.1
libdl.so.1 => /lib/64/libdl.so.1
libsunperf.so.3 => /local/apps/studio12/lib/amd64/libsunperf.so.3
libm.so.1 => /lib/64/libm.so.1
libthread.so.1 => /lib/64/libthread.so.1
libpthread.so.1 => /lib/64/libpthread.so.1
libmp.so.2 => /lib/64/libmp.so.2
libmd.so.1 => /lib/64/libmd.so.1
libscf.so.1 => /lib/64/libscf.so.1
libpicl.so.1 => /usr/lib/64/libpicl.so.1
libuutil.so.1 => /lib/64/libuutil.so.1
libgen.so.1 => /lib/64/libgen.so.1
libsmbios.so.1 => /usr/lib/64/libsmbios.so.1
However, without having /usr/lib/amd64 in the LD_LIBRARY_PATH_64 ld tries
to resolv /lib/libmtsk.so.1 instead of /lib/amd64/libmtsk.so.1 .
When one adds /usr/lib/amd64 to the LD_*, it picks up the latter one,
but dies later with the same message. See:
http://iws.cs.uni-magdeburg.de/~elkner/studio/truss0.out
http://iws.cs.uni-magdeburg.de/~elkner/studio/truss.out
Regards,
jel.
> > > On Wed, Dec 16, 2009 at 11:11:06PM +0100, Jens Elkner wrote:
> > > > Hi,
> > > >
> > > > trying to compile R, but always get:
> > > >
> > > > ld.so.1: R: fatal: relocation error: R_AMD64_32: file
> > > > /export/scratch/elkner/build/R-2.10.1/lib/libR.so: symbol (unknown):
> > > > value 0xfffffd7fedbd0000 does not fit
> > > >
> > > > Compiled the stuff already with several flag combinations, incl.
> > > > CFLAGS with '-xmodel=medium -m64' and
> > > > LDFLAGS with '-xmodel=medium -Wl,-z,defs -Wl,-z,now -m64'
> > > > (amd64,snv_b126,studio 12.1), but seems to be unfixable :(.
> > > >
> > > > Any hints, what's going wrong or how to find out that "strange" symbol
> > > > in question/where it comes from?
> > --
> > Otto-von-Guericke University http://www.cs.uni-magdeburg.de/
> > Department of Computer Science Geb. 29 R 027, Universitaetsplatz 2
> > 39106 Magdeburg, Germany Tel: +49 391 67 12768
>
> --
> Sherry Moore, Solaris Core Kernel http://blogs.sun.com/sherrym
--
Otto-von-Guericke University http://www.cs.uni-magdeburg.de/
Department of Computer Science Geb. 29 R 027, Universitaetsplatz 2
39106 Magdeburg, Germany Tel: +49 391 67 12768
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