Hello community, here is the log from the commit of package pymol for openSUSE:Factory checked in at Mon Sep 19 21:25:52 CEST 2011.
-------- New Changes file: --- /dev/null 2010-08-26 16:28:41.000000000 +0200 +++ /mounts/work_src_done/STABLE/pymol/pymol.changes 2011-09-16 04:26:07.000000000 +0200 @@ -0,0 +1,76 @@ +------------------------------------------------------------------- +Fri Sep 16 01:54:16 UTC 2011 - dh...@wustl.edu + +- update to svn rev 3965 + * Fixed a conversion bug in util.cbc; thanks Hongbo. + * Added A > Compute > Molecular Weight and cleaned up the compute menu in general + * Fixed click-flash that happens when middle-clicking when showing the background + gradient (thanks, Blaine) + * Added A > Generate > Selection > polar, non_polar, acceptor/donator options + +------------------------------------------------------------------- +Fri Aug 5 22:22:56 UTC 2011 - dh...@wustl.edu + +- update to svn rev 3962: + * code cleanup + * fix opengl from python + * read and importing fixes + +------------------------------------------------------------------- +Thu Jul 7 19:32:39 UTC 2011 - dh...@wustl.edu + +- Small state bugfix +- Feedback bugfix +- Updated TNT to 3.0b + +------------------------------------------------------------------- +Sun Jul 3 13:44:10 UTC 2011 - sasc...@gmx.de + +- Spec file cleanup: + * Added proper license header + * Removed authors from description + +------------------------------------------------------------------- +Fri Jun 17 13:51:09 UTC 2011 - dh...@wustl.edu + +- have just one package rather than pymol+python-pymol, maybe chempy +will split out later + +------------------------------------------------------------------- +Thu Jun 16 21:56:32 UTC 2011 - dh...@wustl.edu + +- update to svn version 3955 +- fixed stick coloring +- fixed save mol file +- fixed shading/fog +- fixed volume shaders +- supress guess valences + +------------------------------------------------------------------- +Thu Jun 2 19:02:45 UTC 2011 - dh...@wustl.edu + +- update to svn version 3951 +- fix clipped group names +- much faster ribbons + +------------------------------------------------------------------- +Tue May 10 20:02:06 UTC 2011 - dh...@wustl.edu + +- move pymol_path stuff into python module + +------------------------------------------------------------------- +Tue May 10 19:42:45 UTC 2011 - dh...@wustl.edu + +- fix dependencies +- mark file as executable + +------------------------------------------------------------------- +Tue May 10 17:49:20 UTC 2011 - dh...@wustl.edu + +correct separation between pymol and python-pymol- + +------------------------------------------------------------------- +Tue May 10 16:25:06 UTC 2011 - dh...@wustl.edu + +Initial checkin of pymol 1.4.1- + calling whatdependson for head-i586 New: ---- 1_rpmroot.patch pymol-1.4.1.svn3965.tar.bz2 pymol.changes pymol.spec ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Other differences: ------------------ ++++++ pymol.spec ++++++ # # spec file for package pymol # # Copyright (c) 2011 SUSE LINUX Products GmbH, Nuernberg, Germany. # # All modifications and additions to the file contributed by third parties # remain the property of their copyright owners, unless otherwise agreed # upon. The license for this file, and modifications and additions to the # file, is the same license as for the pristine package itself (unless the # license for the pristine package is not an Open Source License, in which # case the license is the MIT License). An "Open Source License" is a # license that conforms to the Open Source Definition (Version 1.9) # published by the Open Source Initiative. # # Please submit bugfixes or comments via http://bugs.opensuse.org/ # Name: pymol Version: 1.4.1.svn3965 Release: 0 Url: http://pymol.org Summary: A Molecular Viewer License: CNRI Python License Group: Productivity/Scientific/Chemistry Source: %{name}-%{version}.tar.bz2 Patch0: 1_rpmroot.patch BuildRoot: %{_tmppath}/%{name}-%{version}-build BuildRequires: python-devel BuildRequires: freeglut-devel BuildRequires: gcc-c++ BuildRequires: glew-devel BuildRequires: libpng-devel Requires: glew Requires: python-pmw %if 0%{?suse_version} %py_requires %if 0%{?suse_version} > 1010 BuildRequires: fdupes %endif %endif %description PyMOL is a molecular graphics system targetted at medium to large biomolecules like proteins. It can generate high-quality publication-ready molecular graphics images and animations. Features include: * Visualization of molecules, molecular trajectories and surfaces of crystallography data or orbitals * Molecular builder and sculptor * Internal raytracer and movie generator * Fully extensible and scriptable via a python interface File formats PyMOL can read include PDB, XYZ, CIF, MDL Molfile, ChemDraw, CCP4 maps, XPLOR maps and Gaussian cube maps. %prep %setup -q %patch0 sed -i "1d" modules/pmg_tk/startup/apbs_tools.py # Remove she-bang line %build CFLAGS="%{optflags}" python setup.py build %install python setup.py install --prefix=%{_prefix} --root=%{buildroot} PYTHONPATH=%{buildroot}%{py_sitedir} python setup2.py install --root=%{buildroot} install -D pymol %{buildroot}%{_bindir}/pymol %if 0%{?suse_version} > 1010 %fdupes %{buildroot}%{_prefix} %endif %clean rm -rf %{buildroot} %files %defattr(-,root,root) %{_bindir}/pymol %{python_sitearch}* %changelog ++++++ 1_rpmroot.patch ++++++ --- setup2.py.orig 2009-04-17 09:57:26.887027924 +0200 +++ setup2.py 2009-04-17 11:57:39.835033241 +0200 @@ -36,16 +36,24 @@ else: uninstall = 0 + try: pymol_launch = 3 import pymol + import getopt if not (os.path.exists("data") and os.path.exists("LICENSE")): print ' Please run "python setup2.py" from the PyMOL source directory.' else: + rpm_root = "" + opts, args = getopt.gnu_getopt(sys.argv[1:], "r:", ["root="]) + for opt, arg in opts: + if opt in ("-r", "--root"): + rpm_root = arg pymol_file = sys.modules['pymol'].__file__ if pymol_file[-4:]==".pyc": pymol_file = pymol_file[0:-1] + inst_pymol_file = re.sub("^" + rpm_root,"/",pymol_file) site_packages = os.path.split(os.path.split(pymol_file)[0])[0] @@ -107,7 +115,7 @@ if python_exe[0:2]=="./": python_exe=os.getcwd()+"/"+python_exe[2:] if sys.platform!='win32': - f.write(python_exe+" "+pymol_file+" \"$@\"\n") + f.write(python_exe+" "+inst_pymol_file+" \"$@\"\n") else: f.write('"%s" "%s" %%1 %%2 %%3 %%4 %%5 %%6 %%7 %%8 %%9\n'%(python_exe,pymol_file)) f.close() ++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++ Remember to have fun... -- To unsubscribe, e-mail: opensuse-commit+unsubscr...@opensuse.org For additional commands, e-mail: opensuse-commit+h...@opensuse.org
