Hello community,
here is the log from the commit of package python-scipy for openSUSE:Factory
checked in at 2017-07-12 19:36:10
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/python-scipy (Old)
and /work/SRC/openSUSE:Factory/.python-scipy.new (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python-scipy"
Wed Jul 12 19:36:10 2017 rev:25 rq:509559 version:0.19.1
Changes:
--------
--- /work/SRC/openSUSE:Factory/python-scipy/python-scipy.changes
2017-05-08 19:02:20.193886549 +0200
+++ /work/SRC/openSUSE:Factory/.python-scipy.new/python-scipy.changes
2017-07-12 19:36:10.566906622 +0200
@@ -1,0 +2,28 @@
+Tue Jul 11 19:55:40 UTC 2017 - toddrme2...@gmail.com
+
+- More rpmlint fixes.
+
+-------------------------------------------------------------------
+Mon Jul 10 18:25:30 UTC 2017 - toddrme2...@gmail.com
+
+- Update to version 0.19.1
+ * #7214: Memory use in integrate.quad in scipy-0.19.0
+ * #7258: linalg.matrix_balance gives wrong transformation matrix
+ * #7262: Segfault in daily testing
+ * #7273: scipy.interpolate._bspl.evaluate_spline gets wrong type
+ * #7335: scipy.signal.dlti(A,B,C,D).freqresp() fails
+ * #7211: BUG: convolve may yield inconsistent dtypes with method changed
+ * #7216: BUG: integrate: fix refcounting bug in quad()
+ * #7229: MAINT: special: Rewrite a test of wrightomega
+ * #7261: FIX: Corrected the transformation matrix permutation
+ * #7265: BUG: Fix broken axis handling in spectral functions
+ * #7266: FIX 7262: ckdtree crashes in query_knn.
+ * #7279: Upcast half- and single-precision floats to doubles in BSpline...
+ * #7336: BUG: Fix signal.dfreqresp for StateSpace systems
+ * #7419: Fix several issues in sparse.load_npz, save_npz
+ * #7420: BUG: stats: allow integers as kappa4 shape parameters
+- Add no_implicit_decl.patch
+ Fixes implicit-pointer-decl warnings and implicit-fortify-decl error.
+- Fix wrong-script-interpreter rpmlint error.
+
+-------------------------------------------------------------------
Old:
----
scipy-0.19.0.zip
New:
----
no_implicit_decl.patch
scipy-0.19.1.tar.gz
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-scipy.spec ++++++
--- /var/tmp/diff_new_pack.afyHkU/_old 2017-07-12 19:36:14.610335454 +0200
+++ /var/tmp/diff_new_pack.afyHkU/_new 2017-07-12 19:36:14.614334889 +0200
@@ -16,45 +16,43 @@
#
%if 0%{?is_opensuse} == 0
-%bcond_with openblas
+ %bcond_with openblas
%else
-%ifarch armv6l
-%bcond_with openblas
-%ifarch s390x
-%bcond_with openblas
-%else
-%else
-%if 0%{?sle_version} == 120200
-%ifarch i586
-%bcond_with openblas
-%else
-%bcond_without openblas
-%endif
-%else
-%bcond_without openblas
-%endif
-%endif
-%endif
+ %ifarch armv6l s390x
+ %bcond_with openblas
+ %else
+ %if 0%{?sle_version} == 120200
+ %ifarch i586
+ %bcond_with openblas
+ %else
+ %bcond_without openblas
+ %endif
+ %else
+ %bcond_without openblas
+ %endif
+ %endif
%endif
%{?!python_module:%define python_module() python-%{**} python3-%{**}}
Name: python-scipy
-Version: 0.19.0
+Version: 0.19.1
Release: 0
Summary: Scientific Tools for Python
License: BSD-3-Clause and LGPL-2.0+
Group: Development/Libraries/Python
Url: http://www.scipy.org
-Source0:
https://files.pythonhosted.org/packages/source/s/scipy/scipy-%{version}.zip
+Source0:
https://files.pythonhosted.org/packages/source/s/scipy/scipy-%{version}.tar.gz
+# PATCH-FIX-OPENSUSE - no_implicit_decl.patch - Fix implicit-pointer-decl
warnings and implicit-fortify-decl error
+Patch0: no_implicit_decl.patch
BuildRequires: blas-devel
BuildRequires: fdupes
BuildRequires: fftw-devel
BuildRequires: gcc-c++
BuildRequires: gcc-fortran
BuildRequires: lapack-devel
+BuildRequires: lapacke-devel
BuildRequires: suitesparse-devel-static
BuildRequires: swig
-BuildRequires: unzip
%if %{with openblas}
BuildRequires: openblas-devel
%endif
@@ -63,8 +61,7 @@
BuildRequires: %{python_module devel}
BuildRequires: %{python_module numpy-devel >= 1.5.1}
BuildRequires: %{python_module setuptools}
-Requires: %{python_module numpy >= 1.5.1}
-BuildRoot: %{_tmppath}/%{name}-%{version}-build
+Requires: python-numpy >= 1.5.1
%python_subpackages
%description
@@ -80,6 +77,7 @@
%prep
%setup -q -n scipy-%{version}
+%patch0 -p1
find . -type f -name "*.py" -exec sed -i "s|#!/usr/bin/env python||" {} \;
cat > site.cfg << EOF
@@ -99,17 +97,25 @@
export FFTW=%{_libdir}
export BLAS=%{_libdir}
export LAPACK=%{_libdir}
+%if %{with openblas}
export OPENBLAS=%{_libdir}
+%endif
%python_exec setup.py config_fc --fcompiler=gnu95 --noarch build
%install
%python_install
-%{python_expand find %{buildroot}/%{python_sitearch}/scipy -type d -name tests
| xargs rm -rf # Don't ship tests
+%{python_expand pushd %{buildroot}%{$python_sitearch}
+find scipy -type d -name tests | xargs rm -rf # Don't ship tests
# fix executability issue
-chmod +x %{buildroot}/%{python_sitearch}/scipy/io/arff/arffread.py
-chmod +x %{buildroot}/%{python_sitearch}/scipy/special/spfun_stats.py
-chmod +x %{buildroot}/%{python_sitearch}/scipy/special/generate_ufuncs.py
-%fdupes %{buildroot}%{python_sitearch}
+modpaths=( "scipy/io/arff/arffread.py" "scipy/special/spfun_stats.py"
"scipy/special/generate_ufuncs.py" )
+for f in "${modpaths[@]}" ; do
+chmod a+x $f
+sed -i "s|#! /usr/bin/env python|#!%__$python|" $f
+$python -m compileall -d %{$python_sitearch} `dirname $f`
+$python -O -m compileall -d %{$python_sitearch} `dirname $f`
+done
+popd
+%fdupes %{buildroot}%{$python_sitearch}
}
%files %{python_files}
++++++ no_implicit_decl.patch ++++++
From: toddrme2...@gmail.com
Date: 2017-07-40
Subject: Fix implicit-pointer-decl warnings and implicit-fortify-decl errors
Fix the following warnings:
Program is using implicit definitions of functions getting
pointers or implemented by macros.
W: python-scipy implicit-pointer-decl
scipy/sparse/linalg/dsolve/SuperLU/SRC/dmach.c:52
W: python-scipy implicit-pointer-decl
scipy/sparse/linalg/dsolve/SuperLU/SRC/smach.c:52
And fix the following error:
I: Program is using implicit definitions of special functions.
E: python-scipy implicit-fortify-decl scipy/spatial/qhull_misc.h:23
---
--- a/scipy/sparse/linalg/dsolve/SuperLU/SRC/dmach.c
+++ b/scipy/sparse/linalg/dsolve/SuperLU/SRC/dmach.c
@@ -1,6 +1,7 @@
#include <float.h>
#include <math.h>
#include <stdio.h>
+#include <string.h>
double dmach(char *cmach)
{
--- a/scipy/sparse/linalg/dsolve/SuperLU/SRC/smach.c
+++ b/scipy/sparse/linalg/dsolve/SuperLU/SRC/smach.c
@@ -1,6 +1,7 @@
#include <float.h>
#include <math.h>
#include <stdio.h>
+#include <string.h>
float smach(char *cmach)
{
--- a/scipy/spatial/qhull_misc.h
+++ b/scipy/spatial/qhull_misc.h
@@ -3,6 +3,8 @@
*/
#include "qhull_misc_config.h"
+#include <stdio.h>
+#include <lapacke.h>
#if defined(NO_APPEND_FORTRAN)
#if defined(UPPERCASE_FORTRAN)
