Hello community,
here is the log from the commit of package python-rpy2 for openSUSE:Factory
checked in at 2019-07-26 12:42:44
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/python-rpy2 (Old)
and /work/SRC/openSUSE:Factory/.python-rpy2.new.4126 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python-rpy2"
Fri Jul 26 12:42:44 2019 rev:6 rq:718616 version:3.0.5
Changes:
--------
--- /work/SRC/openSUSE:Factory/python-rpy2/python-rpy2.changes 2018-12-04
20:55:40.160763355 +0100
+++ /work/SRC/openSUSE:Factory/.python-rpy2.new.4126/python-rpy2.changes
2019-07-26 12:42:45.525845698 +0200
@@ -1,0 +2,81 @@
+Thu Jul 25 17:54:48 UTC 2019 - Todd R <toddrme2...@gmail.com>
+
+- Update to Release 3.0.5
+ + Bugs fixed
+ * No longer allow installation if Python 3 but < 3.5.
+ * Fixed error `undefined symbol: DATAPTR` if R < 3.5.
+- Update to Release 3.0.4
+ + Bugs fixed
+ * Fixed conversion of `pandas` :class:`Series` of dtype
`pandas.Int32Dtype`,
+ or `pandas.Int64Dtype`.
+- Update to Release 3.0.3
+ + Bugs fixed
+ * Fixed the evaluation of R code using the "R magic" was delaying all
+ output to the end of the execution of that code, independently of
+ whether the attribute `cache_display_data` was `True` or `False`.
+ * Fixed conversion of :class:`pandas.Series` of `dtype` "object" when
+ all items are either all of the same type or are :obj:`None`.
+- Update to Release 3.0.2
+ + Bugs fixed
+ * Failing to import `pandas` or `numpy` when loading the "R magic"
extension
+ for jupyter/ipython was hiding the cause of the error in the
`ImportError`
+ exception.
+ * Fallback when an R `POSIXct` vector does not had an attribute `"tzone"`.
+ * Callback for console reset was not set during R initialization.
+ * Fixed rternalized function returning rpy2 objects.
+ * `--vanilla` is no longer among the default options used to initialize R.
+- Update to Release 3.0.1
+ + Bugs fixed
+ * Script to install R packages for docker image never made it to version
+ control.
+ * Conversion of R arrays/matrices into numpy object trigged a segfault
+ during garbage collection.
+- Update to Release 3.0.0
+ + New features
+ * rpy2 can be installed without a development environment.
+ * Unit tests are now relying on the Python module `pytest`.
+ * :attr:`rpy2.rinterface.NA_Integer` is now only defined when the embedded
R
+ is initialized.
+ + Changes
+ * complete rewrite of :mod:`rpy2.rinterface`.
+ :mod:`cffi` is now used to interface with the R compiled shared library.
+ This allows ABI calls and removes the need to compile binaries. However,
if
+ compilation is available (when installing or preparing pre-compiled
binaries)
+ faster implementations of performance bottlenecks will be available.
+ * calling :func:`rpy2.rinterface.endr` multiple times is now only ending R
+ the first time it is called (note: an ended R cannot successfully be
+ re-initialized).
+ * The conversion system in the mod:`rpy2.robjects.conversion` now has only
+ two conversions `py2rpy` and rpy2py`. `py2rpy` tries to convert any
+ Python object into an object rpy2 can use with R and `rpy2py` tries
+ to convert any rpy2 object into a either a non-rpy2 Python object or
+ a mod:`rpy2.robjects` level object.
+ * The method `get` for R environments is now called `find()` to avoid
+ confusion with the method of the same name in Python (:meth:`dict.get`).
+ * :class:`rpy2.robjects.vectors.Vector`,
:class:`rpy2.robjects.vectors.Matrix`,
+ and :class:`rpy2.robjects.vectors.Array` can no longer be used to create
+ R arrays of unspecified type. New type-specific classes (for example for
+ vectors :class:`rpy2.robjects.vectors.IntVector`,
+ :class:`rpy2.robjects.vectors.BoolVector`,
+ :class:`rpy2.robjects.vectors.FloatVector`,
+ :class:`rpy2.robjects.vectors.ComplexVector`, or
+ :class:`rpy2.robjects.vectors.StrVector`) should be used instead.
+ * mod:`rpy2.rpy_classic`, an implementation of the `rpy` interface using
+ :mod:`rpy2.rinterface` is no longer available.
+ * :class:`rpy2.robjects.ParsedCode` and
+ :class:`rpy2.robjects.SourceCode` are moved to
+ :class:`rpy2.robjects.packages.ParsedCode` and
+ :class:`rpy2.robjects.packages.SourceCode`.
+ + Bugs fixed
+ * Row names in R data frames were lost when converting to pandas data
frames.
+ + Known issues
+ * Mismatch between R's POSIXlt `wday` and Python time struct_time's
`tm_wday`.
+- Update to Release 2.9.6
+ + Bugs fixed
+ * Latest release of :mod:`pandas` deprecated :meth:`DataFrame.from_items`.
+ * Latest release of :mod:`pandas` requires categories to be a list
+ (not an other sequence).
+ + Known issues
+ * The numpy buffer implemented by R arrays is broken for complex numbers
+
+-------------------------------------------------------------------
Old:
----
rpy2-2.9.5.tar.gz
New:
----
rpy2-3.0.5.tar.gz
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-rpy2.spec ++++++
--- /var/tmp/diff_new_pack.oD6bn0/_old 2019-07-26 12:42:46.461845296 +0200
+++ /var/tmp/diff_new_pack.oD6bn0/_new 2019-07-26 12:42:46.461845296 +0200
@@ -1,7 +1,7 @@
#
# spec file for package python-rpy2
#
-# Copyright (c) 2018 SUSE LINUX GmbH, Nuernberg, Germany.
+# Copyright (c) 2019 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -18,33 +18,27 @@
%{?!python_module:%define python_module() python-%{**} python3-%{**}}
%define skip_python2 1
-%bcond_with test
Name: python-rpy2
-Version: 2.9.5
+Version: 3.0.5
Release: 0
Summary: A Python interface to the R Programming Language
License: GPL-2.0-or-later
Group: Development/Libraries/Python
Url: https://bitbucket.org/rpy2/rpy2
Source:
https://files.pythonhosted.org/packages/source/r/rpy2/rpy2-%{version}.tar.gz
-BuildRequires: %{python_module devel}
-BuildRequires: %{python_module numpy-devel}
+BuildRequires: %{python_module cffi >= 1.0.0}
+BuildRequires: %{python_module numpy}
BuildRequires: %{python_module setuptools}
BuildRequires: R-base >= 3.2
-BuildRequires: R-base-devel >= 3.2
BuildRequires: fdupes
-BuildRequires: libbz2-devel
-BuildRequires: libicu-devel
-BuildRequires: pcre-devel
BuildRequires: python-rpm-macros
-BuildRequires: readline-devel
BuildRequires: texinfo
BuildRequires: texlive-latex
-BuildRequires: xz-devel
-BuildRequires: zlib-devel
Requires: R-base >= 2.12
+Requires: python-cffi >= 1.0.0
Requires: python-numpy
Requires: readline
+BuildArch: noarch
%python_subpackages
@@ -67,28 +61,23 @@
%install
%python_install
-%{python_expand chmod a+x %{buildroot}%{$python_sitearch}/rpy2/tests.py
-sed -i "s|^#!/usr/bin/env python$|#!%__$python|"
%{buildroot}%{$python_sitearch}/rpy2/tests.py
-$python -m compileall -d %{$python_sitearch}
%{buildroot}%{$python_sitearch}/rpy2/
-$python -O -m compileall -d %{$python_sitearch}
%{buildroot}%{$python_sitearch}/rpy2/
-%fdupes %{buildroot}%{$python_sitearch}
-}
-
-%if %{with test}
-%check
-mkdir -p tester
-pushd tester
-%{python_expand export PYTHONPATH=%{buildroot}%{$python_sitearch}
-$python -B -m rpy2.tests
-}
-popd
-%endif
+%python_expand %fdupes %{buildroot}%{$python_sitelib}
+
+# Test files have been removed
+# %%check
+# mkdir -p tester
+# pushd tester
+# %%{python_expand export PYTHONPATH=%{buildroot}%{$python_sitearch}
+# $python -B -m rpy2.tests
+# }
+# popd
%files %{python_files}
-%defattr(-,root,root)
%doc AUTHORS NEWS README.rst
%license gpl-2.0.txt
-%{python_sitearch}/rpy2/
-%{python_sitearch}/rpy2-%{version}-py*.egg-info
+%{python_sitelib}/rpy2/
+%{python_sitelib}/rpy2-%{version}-py*.egg-info
+%pycache_only %{python_sitelib}/__pycache__/_rinterface_cffi*.pyc*
+%{python_sitelib}/_rinterface_cffi.py*
%changelog
++++++ rpy2-2.9.5.tar.gz -> rpy2-3.0.5.tar.gz ++++++
++++ 30100 lines of diff (skipped)
