Hello community,
here is the log from the commit of package python-rpy2 for openSUSE:Factory
checked in at 2020-02-10 21:56:27
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/python-rpy2 (Old)
and /work/SRC/openSUSE:Factory/.python-rpy2.new.26092 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "python-rpy2"
Mon Feb 10 21:56:27 2020 rev:9 rq:773171 version:3.2.6
Changes:
--------
--- /work/SRC/openSUSE:Factory/python-rpy2/python-rpy2.changes 2020-02-03
11:13:14.097842404 +0100
+++ /work/SRC/openSUSE:Factory/.python-rpy2.new.26092/python-rpy2.changes
2020-02-10 21:56:30.962293561 +0100
@@ -1,0 +2,13 @@
+Mon Feb 10 15:10:53 UTC 2020 - Todd R <toddrme2...@gmail.com>
+
+- Update to 3.2.6
+ + Bugs fixed
+ * The conversion of date/time object with specified timezones
+ was wrong when different than the local time zone
+ * Iterating over :mod:`rpy2.situation.iter_info()` could result
+ in a error because of a typo in the code.
+ + Changes
+ * :mod:`pandas` 1.0.0 breaks the conversion layer. A warning
+ is not emitted whenever trying to use `pandas` >= 1.0.
+
+-------------------------------------------------------------------
Old:
----
rpy2-3.2.5.tar.gz
New:
----
rpy2-3.2.6.tar.gz
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ python-rpy2.spec ++++++
--- /var/tmp/diff_new_pack.4YmD1k/_old 2020-02-10 21:56:32.174294231 +0100
+++ /var/tmp/diff_new_pack.4YmD1k/_new 2020-02-10 21:56:32.174294231 +0100
@@ -19,7 +19,7 @@
%{?!python_module:%define python_module() python-%{**} python3-%{**}}
%define skip_python2 1
Name: python-rpy2
-Version: 3.2.5
+Version: 3.2.6
Release: 0
Summary: A Python interface to the R Programming Language
License: GPL-2.0-or-later
@@ -65,7 +65,7 @@
# %%check
# mkdir -p tester
# pushd tester
-# %%{python_expand export PYTHONPATH=%{buildroot}%{$python_sitearch}
+# %%{python_expand export PYTHONPATH=%%{buildroot}%%{$python_sitearch}
# $python -B -m rpy2.tests
# }
# popd
++++++ rpy2-3.2.5.tar.gz -> rpy2-3.2.6.tar.gz ++++++
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/rpy2-3.2.5/NEWS new/rpy2-3.2.6/NEWS
--- old/rpy2-3.2.5/NEWS 2020-01-26 22:04:38.000000000 +0100
+++ new/rpy2-3.2.6/NEWS 2020-02-02 17:13:05.000000000 +0100
@@ -1,3 +1,22 @@
+Release 3.2.6
+=============
+
+Bugs fixed
+----------
+
+- The conversion of date/time object with specified timezones
+ was wrong when different than the local time zone (issue #634)
+
+- Iterating over :mod:`rpy2.situation.iter_info()` could result
+ in a error because of a typo in the code.
+
+Changes
+-------
+
+- :mod:`pandas` 1.0.0 breaks the conversion layer. A warning
+ is not emitted whenever trying to use `pandas` >= 1.0.
+
+
Release 3.2.5
=============
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/rpy2-3.2.5/PKG-INFO new/rpy2-3.2.6/PKG-INFO
--- old/rpy2-3.2.5/PKG-INFO 2020-01-26 22:08:18.000000000 +0100
+++ new/rpy2-3.2.6/PKG-INFO 2020-02-02 17:14:11.000000000 +0100
@@ -1,6 +1,6 @@
Metadata-Version: 1.1
Name: rpy2
-Version: 3.2.5
+Version: 3.2.6
Summary: Python interface to the R language (embedded R)
Home-page: https://rpy2.bitbucket.io
Author: Laurent Gautier
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/rpy2-3.2.5/rpy2/__init__.py
new/rpy2-3.2.6/rpy2/__init__.py
--- old/rpy2-3.2.5/rpy2/__init__.py 2020-01-26 22:04:38.000000000 +0100
+++ new/rpy2-3.2.6/rpy2/__init__.py 2020-02-02 16:51:54.000000000 +0100
@@ -1,4 +1,4 @@
-__version_vector__ = (3,2,5)
+__version_vector__ = (3,2,6)
__version__ = '.'.join(str(x) for x in __version_vector__)
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/rpy2-3.2.5/rpy2/robjects/pandas2ri.py
new/rpy2-3.2.6/rpy2/robjects/pandas2ri.py
--- old/rpy2-3.2.5/rpy2/robjects/pandas2ri.py 2019-12-18 22:36:55.000000000
+0100
+++ new/rpy2-3.2.6/rpy2/robjects/pandas2ri.py 2020-02-02 17:10:05.000000000
+0100
@@ -30,6 +30,9 @@
# activate in the function activate() below.
import rpy2.robjects.numpy2ri as numpy2ri
+if not pandas.__version__.startswith('0.'):
+ warnings.warn('pandas >= 1.0 is not supported.')
+
original_converter = None
ISOdatetime = rinterface.baseenv['ISOdatetime']
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/rpy2-3.2.5/rpy2/robjects/vectors.py
new/rpy2-3.2.6/rpy2/robjects/vectors.py
--- old/rpy2-3.2.5/rpy2/robjects/vectors.py 2019-12-18 22:36:55.000000000
+0100
+++ new/rpy2-3.2.6/rpy2/robjects/vectors.py 2020-02-02 03:52:36.000000000
+0100
@@ -922,20 +922,23 @@
def iter_localized_datetime(self):
"""Iterator yielding localized Python datetime objects."""
try:
- tzone_name = self.do_slot('tzone')[0]
+ r_tzone_name = self.do_slot('tzone')[0]
except LookupError:
warnings.warn('R object inheriting from "POSIXct" but without '
'attribute "tzone".')
- tzone_name = ''
- if tzone_name == '':
+ r_tzone_name = ''
+ if r_tzone_name == '':
# R is implicitly using the local timezone, while Python
# time libraries will assume UTC.
- tzone = get_timezone()
+ r_tzone = get_timezone()
else:
- tzone = pytz.timezone(tzone_name)
+ r_tzone = pytz.timezone(r_tzone_name)
+
for x in self:
- yield (None if math.isnan(x)
- else tzone.localize(datetime.fromtimestamp(x)))
+ yield (
+ None if math.isnan(x)
+ else datetime.fromtimestamp(x, r_tzone)
+ )
class Array(Vector):
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/rpy2-3.2.5/rpy2/situation.py
new/rpy2-3.2.6/rpy2/situation.py
--- old/rpy2-3.2.5/rpy2/situation.py 2020-01-26 22:04:38.000000000 +0100
+++ new/rpy2-3.2.6/rpy2/situation.py 2020-02-02 16:51:54.000000000 +0100
@@ -256,7 +256,7 @@
yield ' Calling `R RHOME`: %s' % r_home
if r_home is not None and r_home_default is not None:
- if os.path.abst(r_home) != r_home_default:
+ if os.path.abspath(r_home) != r_home_default:
yield (' Warning: The environment variable R_HOME '
'differs from the default R in the PATH.')
else:
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/rpy2-3.2.5/rpy2/tests/robjects/lib/test_dplyr.py
new/rpy2-3.2.6/rpy2/tests/robjects/lib/test_dplyr.py
--- old/rpy2-3.2.5/rpy2/tests/robjects/lib/test_dplyr.py 2020-01-26
22:04:38.000000000 +0100
+++ new/rpy2-3.2.6/rpy2/tests/robjects/lib/test_dplyr.py 2020-02-02
16:51:54.000000000 +0100
@@ -14,7 +14,6 @@
mtcars = data(datasets).fetch('mtcars')['mtcars']
@pytest.mark.skipif(not has_dplyr, reason='R package dplyr is not installed.')
-@pytest.mark.lib_dplyr
class TestDplyr(object):
def test_dataframe(self):
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/rpy2-3.2.5/rpy2/tests/robjects/lib/test_ggplot2.py
new/rpy2-3.2.6/rpy2/tests/robjects/lib/test_ggplot2.py
--- old/rpy2-3.2.5/rpy2/tests/robjects/lib/test_ggplot2.py 2020-01-26
22:04:38.000000000 +0100
+++ new/rpy2-3.2.6/rpy2/tests/robjects/lib/test_ggplot2.py 2020-02-02
16:51:54.000000000 +0100
@@ -13,7 +13,6 @@
mtcars = datasets.__rdata__.fetch('mtcars')['mtcars']
@pytest.mark.skipif(not has_ggplot, reason='R package ggplot is not
installed.')
-@pytest.mark.lib_ggplot2
class TestGGplot(object):
def test_gglot(self):
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore'
old/rpy2-3.2.5/rpy2/tests/robjects/test_vector_datetime.py
new/rpy2-3.2.6/rpy2/tests/robjects/test_vector_datetime.py
--- old/rpy2-3.2.5/rpy2/tests/robjects/test_vector_datetime.py 2019-12-18
22:36:55.000000000 +0100
+++ new/rpy2-3.2.6/rpy2/tests/robjects/test_vector_datetime.py 2020-02-02
03:52:36.000000000 +0100
@@ -81,7 +81,23 @@
def testPOSIXct_getitem():
- dt = (datetime.datetime(2014, 12, 11) -
datetime.datetime(1970,1,1)).total_seconds()
+ dt = ((datetime.datetime(2014, 12, 11) - datetime.datetime(1970,1,1))
+ .total_seconds())
sexp = robjects.r('ISOdate(c(2013, 2014), 12, 11, hour = 0, tz = "UTC")')
res = robjects.POSIXct(sexp)
assert (res[1] - dt) == 0
+
+
+def testPOSIXct_iter_localized_datetime():
+ timestamp = 1234567890
+ timezone = 'UTC'
+ r_vec = robjects.r('as.POSIXct')(
+ timestamp,
+ origin='1960-01-01', tz=timezone)
+ r_times = robjects.r('strftime')(r_vec,
+ format="%H:%M:%S",
+ tz=timezone)
+ py_value = next(r_vec.iter_localized_datetime())
+ assert r_times[0] == ':'.join(
+ ('%i' % getattr(py_value, x) for x in ('hour', 'minute', 'second'))
+ )
diff -urN '--exclude=CVS' '--exclude=.cvsignore' '--exclude=.svn'
'--exclude=.svnignore' old/rpy2-3.2.5/rpy2.egg-info/PKG-INFO
new/rpy2-3.2.6/rpy2.egg-info/PKG-INFO
--- old/rpy2-3.2.5/rpy2.egg-info/PKG-INFO 2020-01-26 22:08:17.000000000
+0100
+++ new/rpy2-3.2.6/rpy2.egg-info/PKG-INFO 2020-02-02 17:14:11.000000000
+0100
@@ -1,6 +1,6 @@
Metadata-Version: 1.1
Name: rpy2
-Version: 3.2.5
+Version: 3.2.6
Summary: Python interface to the R language (embedded R)
Home-page: https://rpy2.bitbucket.io
Author: Laurent Gautier
