Hello community,
here is the log from the commit of package bowtie2 for openSUSE:Factory checked
in at 2020-10-23 12:21:59
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/bowtie2 (Old)
and /work/SRC/openSUSE:Factory/.bowtie2.new.3463 (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "bowtie2"
Fri Oct 23 12:21:59 2020 rev:6 rq:843449 version:2.4.2
Changes:
--------
--- /work/SRC/openSUSE:Factory/bowtie2/bowtie2.changes 2020-10-20
16:19:23.898265158 +0200
+++ /work/SRC/openSUSE:Factory/.bowtie2.new.3463/bowtie2.changes
2020-10-23 12:23:35.360734503 +0200
@@ -1,0 +2,10 @@
+Wed Oct 21 23:01:20 UTC 2020 - Atri Bhattacharya <badshah...@gmail.com>
+
+- Actually update bowtie2 source to version 2.4.2 (fixing previous
+ revision).
+- Drop patches incorporated upstream:
+ * bowtie2-processor_support.patch (commit ebb07cf).
+ * bowtie2-cmake-install-targets.patch (commit c9d92ce).
+- Package README.md file as doc.
+
+-------------------------------------------------------------------
Old:
----
bowtie2-2.4.1.tar.gz
bowtie2-cmake-install-targets.patch
bowtie2-processor_support.patch
New:
----
bowtie2-2.4.2.tar.gz
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ bowtie2.spec ++++++
--- /var/tmp/diff_new_pack.oi5UQD/_old 2020-10-23 12:23:36.136735042 +0200
+++ /var/tmp/diff_new_pack.oi5UQD/_new 2020-10-23 12:23:36.140735045 +0200
@@ -21,7 +21,7 @@
%define _lto_cflags %{nil}
%endif
Name: bowtie2
-Version: 2.4.1
+Version: 2.4.2
Release: 0
Summary: Fast and memory-efficient short read aligner
License: GPL-3.0-only
@@ -29,9 +29,6 @@
URL: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
Source0:
https://github.com/BenLangmead/bowtie2/archive/v%{version}.tar.gz#/%{name}-%{version}.tar.gz
Source1:
https://github.com/simd-everywhere/simde/archive/v%{simde_version}.tar.gz#/simde-%{simde_version}.tar.gz
-# PATCH-FIX-UPSTREAM bowtie2-cmake-install-targets.patch
gh#BenLangmead/bowtie2#292 badshah...@gmail.com -- Add install targets to cmake
scripts and fix tests; patch taken from upstream git
-Patch0: bowtie2-cmake-install-targets.patch
-Patch1: bowtie2-processor_support.patch
BuildRequires: cmake
BuildRequires: fdupes
BuildRequires: gcc-c++
@@ -52,8 +49,6 @@
%prep
%setup -q
%setup -q -b 1
-%patch0 -p1
-%patch1 -p1
pushd third_party
rmdir simde
ln -s ../../simde-*/ simde
@@ -84,7 +79,7 @@
%fdupes %{buildroot}%{_bindir}
%files
-%doc AUTHORS MANUAL NEWS TUTORIAL VERSION
+%doc AUTHORS MANUAL NEWS TUTORIAL BOWTIE2_VERSION README.md
%license LICENSE
%{_bindir}/bowtie2
%{_bindir}/bowtie2-align-l
++++++ bowtie2-2.4.1.tar.gz -> bowtie2-2.4.2.tar.gz ++++++
/work/SRC/openSUSE:Factory/bowtie2/bowtie2-2.4.1.tar.gz
/work/SRC/openSUSE:Factory/.bowtie2.new.3463/bowtie2-2.4.2.tar.gz differ: char
12, line 1
