Hello community,
here is the log from the commit of package R-base for openSUSE:Factory checked
in at 2015-03-11 09:58:05
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Comparing /work/SRC/openSUSE:Factory/R-base (Old)
and /work/SRC/openSUSE:Factory/.R-base.new (New)
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Package is "R-base"
Changes:
--------
--- /work/SRC/openSUSE:Factory/R-base/R-base.changes 2014-12-17
19:14:48.000000000 +0100
+++ /work/SRC/openSUSE:Factory/.R-base.new/R-base.changes 2015-03-11
09:58:07.000000000 +0100
@@ -1,0 +2,190 @@
+Mon Mar 9 10:26:51 UTC 2015 - detlef.ste...@gmx.de
+
+- Upstream release 3.1.3
+- Most important
+ CHANGES IN R 3.1.3:
+
+ NEW FEATURES:
+
+ * The internal method of download.file() can now handle files
+ larger than 2GB on 32-bit builds which support such files (tested
+ on 32-bit R running on 64-bit Windows).
+
+ * kruskal.test() warns on more types of suspicious input.
+
+ * The as.dendrogram() method for "hclust" objects gains a check
+ argument protecting against memory explosion for invalid inputs.
+
+ * capabilities() has a new item long.double which indicates if the
+ build uses a long double type which is longer than double.
+
+ * nlm() no longer modifies the callback argument in place (a new
+ vector is allocated for each invocation, which mimics the
+ implicit duplication that occurred in R < 3.1.0); note that this
+ is a change from the previously documented behavior. (PR#15958)
+
+ * icuSetCollate() now accepts locale = "ASCII" which uses the basic
+ C function strcmp and so collates strings byte-by-byte in
+ numerical order.
+
+ * sessionInfo() tries to report the OS version in use (not just
+ that compiled under, and including details of Linux
+ distributions).
+
+ * model.frame() (used by lm() and many other modelling functions)
+ now warns when it drops contrasts from factors. (Wish of
+ PR#16119)
+
+ * install.packages() and friends now accept the value type =
+ "binary" as a synonym for the native binary type on the platform
+ (if it has one).
+
+ * Single source or binary files can be supplied for
+ install.packages(type = "both") and the appropriate type and
+ repos = NULL will be inferred.
+
+ * New function pcre_config() to report on some of the configuration
+ options of the version of PCRE in use. In particular, this
+ reports if regular expressions using \p{xx} are supported.
+
+ * (Windows.) download.file(cacheOK = FALSE) is now supported when
+ internet2.dll is used.
+
+ * browseURL() has been updated to work with Firefox 36.0 which has
+ dropped support for the -remote interface.
+
+ INSTALLATION and INCLUDED SOFTWARE:
+
+ * The included version of PCRE has been updated to 8.36.
+
+ * configure accepts MAKEINFO=texi2any as another way to ensure
+ texinfo 5.x is used when both 5.x and 4.x are installed.
+
+ UTILITIES:
+
+ * R CMD check now checks the packages used in \donttest sections of
+ the examples are specified in the DESCRIPTION file. (These are
+ needed to run the examples interactively.)
+
+ * R CMD check checks for the undeclared use of GNU extensions in
+ Makefiles, and for Makefiles with a missing final linefeed.
+
+ R CMD build will correct line endings in all Makefiles, not just
+ those in the src directory.
+
+ * R CMD check notes uses of library() and require() in package
+ code: see the section 'Suggested packages' of 'Writing R
+ Extensions' for good practice.
+
+ DEPRECATED AND DEFUNCT:
+
+ * The configure option --with-valgrind-instrumentation=3 is
+ deprecated and will be removed in R 3.2.0.
+
+ BUG FIXES:
+
+ * (Windows.) Rscript.exe was missing a manifest specifying the
+ modern style for common controls (e.g., the download progress
+ bar).
+
+ * If a package had extra documentation files but no vignette, the
+ HTML help system produced an empty index page.
+
+ * The parser now gives an error if a null character is included in
+ a string using Unicode escapes. (PR#16046)
+
+ * qr.Q() failed on complex arguments due to pre-3.0(!) typo.
+ (PR#16054)
+
+ * abs() failed with named arguments when the argument was complex.
+ (PR#16047)
+
+ * "noquote" objects may now be used as columns in dataframes.
+ (PR#15997)
+
+ * Some values with extremely long names were printed incorrectly.
+ (PR#15999)
+
+ * Extremely large exponents on zero expressed in scientific
+ notation (e.g. 0.0e50000) could give NaN. (PR#15976)
+
+ * download.file() reported downloaded sizes as 0KB if less than
+ 1MB, only for R 3.1.2 and only on big-endian platforms.
+
+ * prompt() did not escape percent signs in the automatically
+ generated usage section of help files.
+
+ * drop.terms() dropped some of the attributes of the object it was
+ working with. (PR#16029)
+
+ * (Windows.) The command completion in Rgui.exe messed up the
+ console. (PR#15791)
+
+ * (Windows.) The choose.files() command returned a blank string
+ when the user asked for a single file but cancelled the request.
+ (PR#16074)
+
+ * Math2 S4 group generics failed to correctly dispatch "structure"-
+ and "nonStructure"-derived classes.
+
+ * loadNamespace() imposed undocumented restrictions on the
+ versionCheck parameter. (Reported by Geoff Lee.)
+
+ * Rare over-runs detected by AddressSanitizer in substr() and its
+ replacement version have been avoided.
+
+ _Inter alia_ that fix gives the documented behaviour for
+ substr(x, 1, 2) <- "" (subsequently reported as PR#16214).
+
+ * Loading packages incorrectly defining an S4 generic followed by a
+ function of the same name caused an erroneous cyclic namespace
+ dependency error.
+
+ * Declared vignette encodings are now always passed to the vignette
+ engine.
+
+ * Port Tomas Kalibera's fix from R-devel that restores the
+ loadMethod() fast path, effectively doubling the speed of S4
+ dispatch.
+
+ * power.t.test() and power.prop.test() now make use of the
+ extendInt option of uniroot() and hence work in more extreme
+ cases. (PR#15792)
+
+ * If a package was updated and attached when its namespace was
+ already loaded, it could end up with parts from one version and
+ parts from the other. (PR#16120)
+
+ * tools:::.Rdconv() didn't accept --encoding= due to a typo.
+ (PR#16121)
+
+ * Unix-alike builds without a suitable makeinfo were documented to
+ link the missing HTML manuals to CRAN, but did not.
+
+ * save(*, ascii=TRUE) and load() now correctly deal with NaN's.
+ (PR#16137)
+
+ * split.Date() retains fractional representations while avoiding
+ incomplete class propagation.
+
+ * R_ext/Lapack.h had not been updated for changes made by LAPACK to
+ the argument lists of its (largely internal) functions dlaed2 and
+ dlaed3. (PR#16157)
+
+ * RShowDoc("NEWS", "txt") had not been updated for the layout
+ changes of R 3.1.0.
+
+ * The xtfrm() method for class "Surv" has been corrected and its
+ description expanded.
+
+ * mode(x) <- y would incorrectly evaluate x before changing its
+ mode. (PR#16215)
+
+ * besselJ(1, 2^64) and besselY(..) now signal a warning, returning
+ NaN instead of typically segfaulting. (Issue 3 of PR#15554)
+
+ * HTML conversion of \href markup in .Rd files did not remove the
+ backslash from \% and so gave an invalid URL. In a related
+ change, the \ escape is now required in such URLs.
+
+-------------------------------------------------------------------
Old:
----
R-3.1.2.tar.bz2
New:
----
R-3.1.3.tar.bz2
++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++++
Other differences:
------------------
++++++ R-base.spec ++++++
--- /var/tmp/diff_new_pack.tZ5JKh/_old 2015-03-11 09:58:09.000000000 +0100
+++ /var/tmp/diff_new_pack.tZ5JKh/_new 2015-03-11 09:58:09.000000000 +0100
@@ -1,7 +1,7 @@
#
# spec file for package R-base
#
-# Copyright (c) 2014 SUSE LINUX Products GmbH, Nuernberg, Germany.
+# Copyright (c) 2015 SUSE LINUX GmbH, Nuernberg, Germany.
#
# All modifications and additions to the file contributed by third parties
# remain the property of their copyright owners, unless otherwise agreed
@@ -18,7 +18,7 @@
Name: R-base
%define release 1
-Version: 3.1.2
+Version: 3.1.3
Release: %release
Source: R-%{version}.tar.bz2
#Source: http://cran.r-project.org/src/base/R-2/R-%%{version}.tar.gz
@@ -87,33 +87,33 @@
Requires: xorg-x11-fonts-75dpi
Provides: R = %{version}
-Provides: R-KernSmooth = 2.23.13
-Provides: R-MASS = 7.3.35
-Provides: R-Matrix = 1.1.4
+Provides: R-KernSmooth = 2.23.14
+Provides: R-MASS = 7.3.39
+Provides: R-Matrix = 1.1.5
#Provides: R-base = %%{version} # implicitly provided
-Obsoletes: R-Matrix < 1.1.4
-Provides: R-boot = 1.3.13
-Provides: R-class = 7.3.11
-Provides: R-cluster = 1.15.3
-Provides: R-codetools = 0.2.9
+Obsoletes: R-Matrix < 1.1.5
+Provides: R-boot = 1.3.15
+Provides: R-class = 7.3.12
+Provides: R-cluster = 2.0.1
+Provides: R-codetools = 0.2.10
Provides: R-compiler = %{version}
Provides: R-datasets = %{version}
-Provides: R-foreign = 0.8.61
+Provides: R-foreign = 0.8.63
Provides: R-grDevices = %{version}
Provides: R-graphics = %{version}
Provides: R-grid = %{version}
-Provides: R-lattice = 0.20.29
+Provides: R-lattice = 0.20.30
Provides: R-methods = %{version}
-Provides: R-mgcv = 1.8.3
-Provides: R-nlme = 3.1.118
-Provides: R-nnet = 7.3.8
+Provides: R-mgcv = 1.8.4
+Provides: R-nlme = 3.1.120
+Provides: R-nnet = 7.3.9
Provides: R-parallel = %{version}
-Provides: R-rpart = 4.1.8
-Provides: R-spatial = 7.3.8
+Provides: R-rpart = 4.1.9
+Provides: R-spatial = 7.3.9
Provides: R-splines = %{version}
Provides: R-stats = %{version}
Provides: R-stats4 = %{version}
-Provides: R-survival = 2.37.7
+Provides: R-survival = 2.38.1
Provides: R-tcltk = %{version}
Provides: R-tools = %{version}
Provides: R-utils = %{version}
@@ -125,10 +125,10 @@
%package -n R-base-devel
Summary: Libraries and includefiles for developing with R-base
Group: Development/Libraries/Other
-Provides: R-Matrix-devel = 1.1.4
+Provides: R-Matrix-devel = 1.1.5
Provides: R-devel = %{version}
Requires: R-base
-Obsoletes: R-Matrix-devel < 1.1.4
+Obsoletes: R-Matrix-devel < 1.1.5
%description -n R-base-devel
This package provides the necessary development headers and
@@ -167,6 +167,9 @@
chmod -x %{buildroot}%{_libdir}/R/library/mgcv/CITATION
+# there is a backup file in survival for 3.1.3
+%{__rm} -f %{buildroot}%{_libdir}/R/library/survival/NEWS.Rd.orig
+
%if %suse_version > 1020
%fdupes -s $RPM_BUILD_ROOT
%endif
@@ -564,6 +567,7 @@
%lang(de) %{_libdir}/R/library/spatial/po/de/
%lang(en) %{_libdir}/R/library/spatial/po/en*/
%lang(fr) %{_libdir}/R/library/spatial/po/fr/
+%lang(ko) %{_libdir}/R/library/spatial/po/ko/
%lang(pl) %{_libdir}/R/library/spatial/po/pl/
%{_libdir}/R/library/spatial/ppdata/
%{_libdir}/R/library/spatial/PP.files
++++++ R-3.1.2.tar.bz2 -> R-3.1.3.tar.bz2 ++++++
/work/SRC/openSUSE:Factory/R-base/R-3.1.2.tar.bz2
/work/SRC/openSUSE:Factory/.R-base.new/R-3.1.3.tar.bz2 differ: char 11, line 1
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