Hi Bent: It's good to find another organization using OSCAR for Bioinformatics :)
I guess your ultimate goal is to install FC2 x86_64 on your cluster - I need to check whether FC2 x86_64 is actually supported by the code currently in SVN - however I know for sure that FC2 i386 works, because I have tested it. So just to clarify, are you currently attempting a FC2 i386 install or FC2 x86_64 install? Thanks, Bernard > -----Original Message----- > From: [EMAIL PROTECTED] > [mailto:[EMAIL PROTECTED] On Behalf Of > Bent Terp > Sent: Thursday, October 21, 2004 23:24 > To: oscar-devel > Subject: [Oscar-devel] Re: [Oscar-users] branch-4.0 and FC2 x86_64 > > On Thu 21 October 2004 19.43, Bernard Li wrote: > > [moved to oscar-devel list] > > Yes, you're right, so here I am :-) > > So maybe I should start with a short self-intro: > I work as UNIX admin at Karolinska Instituttet in Stockholm, > split between a department called the Center for Genetics and > Bioinformatics, and a service called the Bioinformatics and > Expression Analysis Core Facility. > > Other than day-to-day maintenance, I've got a pet project > BioRPMS <http://apt.bea.ki.se> - this actually grew from an > internal need for rpm's to keep our own machines in sync with > each other. I do NOT claim to be an expert at rpmbuilding, > but have done about 90 so far - they may be silly and > primitive, though; the earlier ones make even me shake my > head in disgusted amusement when I have to go back and update them. > > My cluster experience is somewhat limited: Upon taking the > job, I inherited an old (1998) DYI beowulf, and couldn't make > heads or tails of it, so I ended up turning half of it into > an oscar, which seemed to please the users. > > Our next deployment involves two small clusters, each with a > dual opteron frontend and a few single opteron nodes. One > cluster for powering our web services, and one for developing > them. I had nearly given up on oscar when I saw Bernard's > mail last week about oscar-4.0, and so decided to see if I > could in some small way help to make it happen. I'd guess > that specfiles and rpms is where I could be of must use, if any. > > > Are you encountering any problems installing the code from > SVN under > > Fedora Core 2? I have no problem using the RPMs provided in the > > /oscar/packages/perl-QT/RPMS directory (I installed on FC2 i386...). > > After installing PerlQt from source, I ran configure again, > and then discovered the perlqt pakages hiding inside.... > > I've tried to do a rough'n'dirty --rebuild on all the srpms > on FC2 i386 - I figured that ought to work before addressing > x86_64 specific issues. That was a bit disappointing, though. > > [EMAIL PROTECTED] biobuild]$ more results.txt > hdf5: ./hdf5/SRPMS/hdf5-oscar-module-1.6.0-1.src.rpm - success > hdf5: ./hdf5/SRPMS/hdf5-oscar-1.6.0-1.src.rpm - failure > loghost: ./loghost/SRPMS/loghost-1.0-1.src.rpm - success > torque: ./torque/SRPMS/torque-1.0.1p5-2.src.rpm - failure > maui: ./maui/SRPMS/maui-oscar-3.2.5p2-7.src.rpm - failure > documentation: > ./documentation/SRPMS/oscar-user-docs-html-2.0b1-1.src.rpm - success > documentation: > ./documentation/SRPMS/oscar-install-docs-html-2.0b1-1.src.rpm > - success > lam: ./lam/SRPMS/lam-oscar-7.0.6-1.src.rpm - success > lam: ./lam/SRPMS/lam-switcher-modulefile-7.0.6-1.src.rpm - success > lam: ./lam/SRPMS/libaio-oscar-0.3.93-5.src.rpm - success > switcher: ./switcher/SRPMS/modules-oscar-3.1.6-5.src.rpm - failure > switcher: ./switcher/SRPMS/env-switcher-1.0.13-1.src.rpm - success > perl-Qt: ./perl-Qt/SRPMS/perl-Qt-5.6-3.006-2.src.rpm - failure > perl-Qt: ./perl-Qt/SRPMS/perl-Qt-mdk-3.006-5.src.rpm - failure > perl-Qt: ./perl-Qt/SRPMS/perl-Qt-3.006-5.src.rpm - failure > perl-Qt: ./perl-Qt/SRPMS/perl-Qt-qt3-compat-1.0-2.src.rpm - success > sis: ./sis/SRPMS/systeminstaller-1.04-1.src.rpm - failure > sis: ./sis/SRPMS/systemimager-3.2.0-1.src.rpm - failure > sis: ./sis/SRPMS/systemconfigurator-2.0.9-1.src.rpm - failure > sis: ./sis/SRPMS/flamethrower-0.1.6-1.src.rpm - failure > kernel_picker: > ./kernel_picker/SRPMS/kernel_picker-1.4-2.src.rpm - failure > c3: ./c3/SRPMS/c3-4.0.1-2.src.rpm - success > c3: ./c3/SRPMS/python2-2.1.1-1tjn.src.rpm - failure > oda: ./oda/SRPMS/oda-1.30-5.src.rpm - failure > mpich: ./mpich/SRPMS/mpich-ch_p4-gcc-oscar-1.2.5.10-2.src.rpm > - success > ganglia: > ./ganglia/SRPMS/ganglia-oscar-monitor-core-2.5.6-1.src.rpm - failure > sync_files: ./sync_files/SRPMS/sync_files-1.6-5.src.rpm - success > pfilter: ./pfilter/SRPMS/pfilter-1.705-1.src.rpm - failure > pfilter: ./pfilter/SRPMS/pfilter-1.699-1.src.rpm - failure > pvm: ./pvm/SRPMS/pvm-3.4.4+11-3.src.rpm - success > pbs: ./pbs/SRPMS/openpbs-oscar-2.3.16-11.src.rpm - failure > opium: ./opium/SRPMS/ssh-oscar-1.1-5.src.rpm - failure > > Glancing briefly at the buildlogs, it looks as if some of the > failures were caused by packages expecting to be built as > root. As this contradicts what everybody else is telling me > about rpm-building, I have to ask if this is a deliberate > design choice? And if yes, then why? > > Or maybe there's some clever chrooted environment setup that > I need to build inside? I've tried working with mach, but > there were too many unresolved issues, so I'm waiting/hoping > for a new release. > > I still feel that I need to get a grip on building on i386 > first, then tackle x86_64. > > > P.S. You need to be subscribed to oscar-devel list to post back, > > incase you aren't already... > > Am now :-) > > > > > > -----Original Message----- > > > From: [EMAIL PROTECTED] > > > [mailto:[EMAIL PROTECTED] On > Behalf Of Bent > > > Terp > > > Sent: Thursday, October 21, 2004 2:02 > > > To: [EMAIL PROTECTED] > > > Subject: [Oscar-users] branch-4.0 and FC2 x86_64 > > > > > > Hi! > > > > > > I'd like to help with getting oscar 4.0 up and running on FC2 > > > x86_64, and FC3 real-soon ;-) > > > > > > Is there a reason I can't find FC2 rpm's for PerlQt? Beyond the > > > usual "well, because nobody's built them". > > > > > > -- > > > MVH / With kind regards, > > > � � � � Bent Terp <[EMAIL PROTECTED]> > > > � � � � System Administrator > > > � � � � Bioinformatics and Expression Analysis Core Facility > > > � � � � Karolinska Institute, Department of Biosciences > > > � � � � H�lsovagen 7-9, 141 57 Huddinge, Sweden > > > > > > > > > ------------------------------------------------------- > > > This SF.net email is sponsored by: IT Product Guide on > > > ITManagersJournal Use IT products in your business? Tell > us what you > > > think of them. Give us Your Opinions, Get Free ThinkGeek Gift > > > Certificates! Click to find out more > > > http://productguide.itmanagersjournal.com/guidepromo.tmpl > > > _______________________________________________ > > > Oscar-users mailing list > > > [EMAIL PROTECTED] > > > https://lists.sourceforge.net/lists/listinfo/oscar-users > > -- > MVH / With kind regards, > � � � � Bent Terp <[EMAIL PROTECTED]> > � � � � System Administrator > � � � � Bioinformatics and Expression Analysis Core Facility > � � � � Karolinska Institute, Department of Biosciences > � � � � H�lsovagen 7-9, 141 57 Huddinge, Sweden > > > ------------------------------------------------------- > This SF.net email is sponsored by: IT Product Guide on > ITManagersJournal > Use IT products in your business? Tell us what you think of > them. Give us > Your Opinions, Get Free ThinkGeek Gift Certificates! Click to > find out more > http://productguide.itmanagersjournal.com/guidepromo.tmpl > _______________________________________________ > Oscar-devel mailing list > [EMAIL PROTECTED] > https://lists.sourceforge.net/lists/listinfo/oscar-devel > > ------------------------------------------------------- This SF.net email is sponsored by: IT Product Guide on ITManagersJournal Use IT products in your business? Tell us what you think of them. Give us Your Opinions, Get Free ThinkGeek Gift Certificates! Click to find out more http://productguide.itmanagersjournal.com/guidepromo.tmpl _______________________________________________ Oscar-devel mailing list [EMAIL PROTECTED] https://lists.sourceforge.net/lists/listinfo/oscar-devel
