Have a look at the actual error messages: Your storage engine is InnoDB. These tables use a different storage engine:
Your current MySQL default storage engine is set to InnoDB. The listed tables are not using InnoDB. MySQL doesn't like databases that use mixed storage engines. Consult the MySQL documentation for how to convert tables to the InnoDB storage engine. Short version: dump the database contents, recreate the tables using InnoDB, and reload the data. The health check script will then stop complaining.
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