Jerven, using owlim-se-5.3.5689 I just executed:
$ wget http://www.uniprot.org/uniprot/P68353.nt
$ curl -X POST -H "Content-Type:text/turtle" -T P68353.nt
http://localhost:8080/openrdf-sesame/repositories/uniprot/statements
$ curl -d "query=DESCRIBE <http://purl.uniprot.org/intact/EBI-530932>"
http://localhost:8080/openrdf-sesame/repositories/uniprot
I got:
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@prefix sesame: <http://www.openrdf.org/schema/sesame#> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix xsd: <http://www.w3.org/2001/XMLSchema#> .
@prefix fn: <http://www.w3.org/2005/xpath-functions#> .
{
<http://purl.uniprot.org/intact/EBI-530932> a
<http://purl.uniprot.org/core/Participant> ;
owl:sameAs <http://purl.uniprot.org/uniprot/P68359> ,
<http://purl.uniprot.org/intact/EBI-530932> ;
rdfs:label "CSN4" .
* <http://purl.uniprot.org/uniprot/P68359> owl:sameAs
<http://purl.uniprot.org/intact/EBI-530932> .**
****
**<http://purl.uniprot.org/intact/EBI-530932> owl:sameAs
<http://purl.uniprot.org/intact/EBI-530932> .**
*
<foo:bar#_5036383335330019>
<http://purl.uniprot.org/core/participant>
<http://purl.uniprot.org/intact/EBI-530932> .
}
Can you provide any more details that might help to reproduce your problem?
Could it simply be your parameter _equivalent=false (I believe there's a
checkbox in the UI), as the database clearly has triples expressing this
equivalence?
Barry
On 19/12/12 09:52, Jerven Bolleman wrote:
Dear ontotext developers,
I am missing a lot of owl:sameAs statements in our data.
I can reproduce the problem both on the linkedlifedata.com as at
beta.sparql.uniprot.org
The version is OwlimSchemaRepository: version: 5.3, revision: 5689
An example is
http://linkedlifedata.com/sparql?query=DESCRIBE+%3Chttp%3A%2F%2Fpurl.uniprot.org%2Fintact%2FEBI-530927%3E&_implicit=false&implicit=true&_equivalent=false&_form=%2Fsparql
The following triple is missing
<http://purl.uniprot.org/intact/EBI-530932>
<http://www.w3.org/2002/07/owl#sameAs>
<http://purl.uniprot.org/uniprot/P68359> .
Which you can find in the source data i.e.
http://www.uniprot.org/uniprot/P68353.nt
This is messing up quite a few queries on our end could you please look
into this as soon as possible. This also affects select and ask
queries so its not just describe.
Regards,
Jerven
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