Hello,
I'm trying to compile ParaView 4.0.1 in our linux x86-64 cluster, but
I'm facing the following error during the compilation step
Compiling
/gpfs/scratch/bsc41/bsc41273/ParaView-v4.0.1-source/build/lib/site-packages/mpi4py/rc.py
...
[ 86%] Built target mpi4py
[ 86%] Building C object
ThirdParty/mpi4py/vtkmpi4py/CMakeFiles/mpi4py.MPE.dir/src/MPE.c.o
Linking C shared module ../../../lib/site-packages/mpi4py/MPE.so
/apps/PYTHON/2.7.3/lib/libpython2.7.a(thread.o): In function
`_pythread_pthread_set_stacksize':
/apps/PYTHON/SRC/Python-2.7.3/Python/thread_pthread.h:491: undefined
reference to `pthread_attr_setstacksize'
/apps/PYTHON/2.7.3/lib/libpython2.7.a(thread.o): In function
`PyThread_release_lock':
/apps/PYTHON/SRC/Python-2.7.3/Python/thread_pthread.h:346: undefined
reference to `sem_post'
/apps/PYTHON/2.7.3/lib/libpython2.7.a(thread.o): In function
`PyThread_acquire_lock':
/apps/PYTHON/SRC/Python-2.7.3/Python/thread_pthread.h:323: undefined
reference to `sem_trywait'
/apps/PYTHON/SRC/Python-2.7.3/Python/thread_pthread.h:321: undefined
reference to `sem_wait'
/apps/PYTHON/2.7.3/lib/libpython2.7.a(thread.o): In function
`PyThread_free_lock':
/apps/PYTHON/SRC/Python-2.7.3/Python/thread_pthread.h:292: undefined
reference to `sem_destroy'
/apps/PYTHON/2.7.3/lib/libpython2.7.a(thread.o): In function
`PyThread_allocate_lock':
/apps/PYTHON/SRC/Python-2.7.3/Python/thread_pthread.h:268: undefined
reference to `sem_init'
/apps/PYTHON/2.7.3/lib/libpython2.7.a(thread.o): In function
`PyThread_start_new_thread':
/apps/PYTHON/SRC/Python-2.7.3/Python/thread_pthread.h:183: undefined
reference to `pthread_attr_setstacksize'
/apps/PYTHON/SRC/Python-2.7.3/Python/thread_pthread.h:193: undefined
reference to `pthread_create'
/apps/PYTHON/SRC/Python-2.7.3/Python/thread_pthread.h:209: undefined
reference to `pthread_detach'
collect2: ld returned 1 exit status
I have the following defines as ccmake reports
PYTHON_MODULE_mpi4py.MPE_BUILD OFF
PYTHON_MODULE_mpi4py.MPI_BUILD OFF
PYTHON_MODULE_mpi4py.dl_BUILD_ OFF
which seem to be related with the problem.
I tried adding LIBS=-lpthread when compiling but it didn't change
anything.
Additionally, our 2.7.3 installation of python only has the static
library, while newer python installations (3.x) have the shared
libraries. Can I use a Python 3 with ParaView?
Do you have any idea on how I can fix the issue?
Thank you very much in advance.
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