Hey folks, If you develop HDF5 readers based on h5py, please report results here. I am sure the community will love to hear from those using it in production. Also, for those that are thinking about using HDF5 in Python, I would highly recommend this book:
http://shop.oreilly.com/product/0636920030249.do Best, -berk On Thu, Jan 29, 2015 at 10:43 AM, Armin Wehrfritz <dkxl...@gmail.com> wrote: > I just stumbled across this interesting blog: > http://berkgeveci.github.io/2015/01/08/h5py-writer-reader/ > > If you have some kind of python knowledge, especially the "HDF5Reader" > part should be very interesting for you. > For this you don't even need the XDMF files. > > -Armin > > > > On 01/28/2015 10:55 PM, Martin Huarte Espinosa wrote: > >> Dear Armin and Dave: thanks for your replies. I will try. >> >> Martin. >> >> On Wed, Jan 28, 2015 at 2:30 PM, Armin Wehrfritz <dkxl...@gmail.com >> <mailto:dkxl...@gmail.com>> wrote: >> >> For such kind of data I typically write a custom made XDMF [1] file. >> XDMF is basically a XML wrapper that contains the description of the >> HDF5 data file. >> What comes in handy in your cases, is that you have the heavy data >> already in a HDF5 file. >> >> I typically write the XDMF file with a hand crafted python script >> since I typically deal with data sets from various source. >> However, there is also a XDMF library [2,3], which should provide >> some convenient advantages. >> >> The XDMF file format is very well supported by ParaView, or VisIt >> for that matter. >> >> I attached 2 XDMF files, so you get an idea what I'm talking of (the >> HDF5 data files are missing though). >> >> -Armin >> >> [1] http://www.xdmf.org/index.php/__Main_Page >> <http://www.xdmf.org/index.php/Main_Page> >> [2] http://www.xdmf.org/index.php/__Get_Xdmf >> <http://www.xdmf.org/index.php/Get_Xdmf> >> [3] http://www.xdmf.org/index.php/__Write_Xdmf >> >> <http://www.xdmf.org/index.php/Write_Xdmf> >> >> >> >> On 01/28/2015 09:52 PM, Martín Huarte E wrote: >> >> Dear Paraview community: Good day. I need assistance on >> visualizing a >> matlab file? Any tips will be greatly appreciated. Thanks. >> >> >> Details: >> I need to visualize temperature distribution in a volume. The >> volume is >> a wedge-like slice of a hollow cylinder (shown in the attached >> schematic). >> >> The calculations are made in MATLAB. The three-dimensional >> matrices of >> the solution (T) and the node-coordinates (X, Y and Z) are saved >> in a >> HDF5 file. >> >> So far, I have not been able to make ParaView to visualize the >> result in >> the actual geometry. They get the length, width and height of >> the volume >> and simply build a cuboid out of them. >> >> Thanks >> >> My best, Martín >> __ >> /Martín Huarte-Espinosa, Ph.D./ >> /Computational Physicist - //High Performance Computing >> Specialist/ >> /linkedin.com/pub/martin-__huarte-espinosa/59/6b7/13a >> <http://linkedin.com/pub/martin-huarte-espinosa/59/6b7/13a> >> <http://linkedin.com/pub/__martin-huarte-espinosa/59/6b7/__13a >> <http://linkedin.com/pub/martin-huarte-espinosa/59/6b7/13a>>/ >> >> >> >> >> >> _________________________________________________ >> Powered by www.kitware.com <http://www.kitware.com> >> >> Visit other Kitware open-source projects at >> http://www.kitware.com/__opensource/opensource.html >> <http://www.kitware.com/opensource/opensource.html> >> >> Please keep messages on-topic and check the ParaView Wiki at: >> http://paraview.org/Wiki/__ParaView >> <http://paraview.org/Wiki/ParaView> >> >> Search the list archives at: >> http://markmail.org/search/?q=__ParaView >> <http://markmail.org/search/?q=ParaView> >> >> Follow this link to subscribe/unsubscribe: >> http://public.kitware.com/__mailman/listinfo/paraview >> <http://public.kitware.com/mailman/listinfo/paraview> >> >> >> _______________________________________________ >> Powered by www.kitware.com <http://www.kitware.com> >> >> Visit other Kitware open-source projects at >> http://www.kitware.com/opensource/opensource.html >> >> Please keep messages on-topic and check the ParaView Wiki at: >> http://paraview.org/Wiki/ParaView >> >> Search the list archives at: http://markmail.org/search/?q=ParaView >> >> Follow this link to subscribe/unsubscribe: >> http://public.kitware.com/mailman/listinfo/paraview >> >> >> >> >> -- >> >> My best, Martín >> __ >> /Martín Huarte-Espinosa, Ph.D./ >> /Computational Physicist - //High Performance Computing Specialist/ >> /linkedin.com/pub/martin-huarte-espinosa/59/6b7/13a >> <http://linkedin.com/pub/martin-huarte-espinosa/59/6b7/13a>/ >> > _______________________________________________ > Powered by www.kitware.com > > Visit other Kitware open-source projects at http://www.kitware.com/ > opensource/opensource.html > > Please keep messages on-topic and check the ParaView Wiki at: > http://paraview.org/Wiki/ParaView > > Search the list archives at: http://markmail.org/search/?q=ParaView > > Follow this link to subscribe/unsubscribe: > http://public.kitware.com/mailman/listinfo/paraview >
_______________________________________________ Powered by www.kitware.com Visit other Kitware open-source projects at http://www.kitware.com/opensource/opensource.html Please keep messages on-topic and check the ParaView Wiki at: http://paraview.org/Wiki/ParaView Search the list archives at: http://markmail.org/search/?q=ParaView Follow this link to subscribe/unsubscribe: http://public.kitware.com/mailman/listinfo/paraview