Does anyone have any feedback on this issue? I have no idea how to debug or continue. I will have to abandon paraview for my project unless I can get some help somehow.
Thanks, Ryan Abernathey Assistant Professor Columbia University, Department of Earth & Environmental Sciences Lamont-Doherty Earth Observatory, Division of Ocean & Climate Physics 205 C Oceanography 61 Route 9W - PO Box 1000 Palisades, NY 10964-8000 http://rabernat.github.io r...@ldeo.columbia.edu On Mon, Oct 19, 2015 at 4:59 PM, Ryan Abernathey <ryan.abernat...@gmail.com> wrote: > Hello, > > I am extremely frustrated and stuck on this problem. Any advice would be > appreciated. > > I am working with a dataset of 2400 sequentially numbered netCDF files > (generic & CF conventions). > > In a fresh pipeline, Paraview is able to recognizes these files as a > single source and load them correctly. I then create a standard pipeline > involving various filters (contour, etc., nothing funny) and save a state > file. > > When I attempt to load the state file, I get the following segmentation > fault. Further down you can see a ncdump of the offending file. > > Would appreciate any advice on how to debug / overcome this issue. Is it a > bug? It sure feels like one... > > Best, > Ryan Abernathey > > > ERROR: In > /home/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/IO/NetCDF/vtkNetCDFReader.cxx, > line 822 > vtkNetCDFCFReader (0x55c0620): netCDF Error: NetCDF: Index exceeds > dimension bound > > > ERROR: In > /home/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/Common/ExecutionModel/vtkExecutive.cxx, > line 784 > vtkPVCompositeDataPipeline (0x5be23d0): Algorithm > vtkFileSeriesReader(0x4c0c3e0) returned failure for request: vtkInformation > (0x8141700) > Debug: Off > Modified Time: 999905 > Reference Count: 1 > Registered Events: (none) > Request: REQUEST_DATA > FORWARD_DIRECTION: 0 > FROM_OUTPUT_PORT: 0 > ALGORITHM_AFTER_FORWARD: 1 > > > > > ERROR: In > /home/kitware/Dashboards/MyTests/NightlyMaster/ParaViewSuperbuild-Release/paraview/src/paraview/VTK/Common/ExecutionModel/vtkExecutive.cxx, > line 784 > vtkCompositeDataPipeline (0x744fde0): Algorithm > vtkPVGeometryFilter(0x7436500) returned failure for request: vtkInformation > (0x5737250) > Debug: Off > Modified Time: 999943 > Reference Count: 1 > Registered Events: (none) > Request: REQUEST_DATA_OBJECT > FORWARD_DIRECTION: 0 > FROM_OUTPUT_PORT: 0 > ALGORITHM_AFTER_FORWARD: 1 > > > > > Segmentation fault (core dumped) > > > > > > ------------------------ > $ ncdump -h rce_rrtm303x512dx3f20_512x512x64_3km_12s_128_0000000300.nc > netcdf rce_rrtm303x512dx3f20_512x512x64_3km_12s_128_0000000300 { > dimensions: > x = 512 ; > y = 512 ; > z = 64 ; > time = UNLIMITED ; // (1 currently) > variables: > float x(x) ; > x:units = "m" ; > float y(y) ; > y:units = "m" ; > float z(z) ; > z:units = "m" ; > z:long_name = "height" ; > float time(time) ; > time:units = "d" ; > time:long_name = "time" ; > float p(z) ; > p:units = "mb" ; > p:long_name = "pressure" ; > float zi(z) ; > zi:units = "m" ; > zi:long_name = "intfc_ht" ; > float U(time, z, y, x) ; > U:long_name = "X Wind > Component " ; > U:units = "m/s " ; > float V(time, z, y, x) ; > V:long_name = "Y Wind > Component " ; > V:units = "m/s " ; > float W(time, z, y, x) ; > W:long_name = "Z Wind > Component " ; > W:units = "m/s " ; > float PP(time, z, y, x) ; > PP:long_name = "Pressure > Perturbation " ; > PP:units = "Pa " ; > float QRAD(time, z, y, x) ; > QRAD:long_name = "Radiative heating > rate " ; > QRAD:units = "K/day " ; > float TABS(time, z, y, x) ; > TABS:long_name = "Absolute > Temperature " ; > TABS:units = "K " ; > float QV(time, z, y, x) ; > QV:long_name = "Water > Vapor " > ; > QV:units = "g/kg " ; > float QN(time, z, y, x) ; > QN:long_name = "Non-precipitating Condensate > (Water+Ice) " ; > QN:units = "g/kg " ; > float QP(time, z, y, x) ; > QP:long_name = "Precipitating Water > (Rain+Snow) " ; > QP:units = "g/kg " ; > float LQRAD(time, z, y, x) ; > LQRAD:long_name = "LW Radiative heating > rate " ; > LQRAD:units = "K/day " ; > float SQRAD(time, z, y, x) ; > SQRAD:long_name = "SW Radiative heating > rate " ; > SQRAD:units = "K/day " ; > } > >
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