Tim, Sorry, no I didn't get a chance to look at it yet. Utkarsh
On Tue, Sep 6, 2016 at 2:52 PM, Gallagher, Timothy P < tim.gallag...@gatech.edu> wrote: > Hi Utkarsh, > > > Have you had a chance to take a look at this yet? I will have some time > later this week to pick it back up -- just wanted to check if there was > anything new about it before I dove back in. > > > Thanks, > > > Tim > > > ------------------------------ > *From:* Utkarsh Ayachit <utkarsh.ayac...@kitware.com> > *Sent:* Tuesday, August 30, 2016 7:51 AM > > *To:* Gallagher, Timothy P > *Cc:* paraview@paraview.org > *Subject:* Re: [Paraview] Status of BoxLib AMR reader > > Thanks, Tim. I'll take a look in next few days. > > Utkarsh > > On Mon, Aug 29, 2016 at 4:12 PM, Gallagher, Timothy P < > tim.gallag...@gatech.edu> wrote: > >> I have to throw in the towel on this one for now and get back to some >> other deadlines... but, I put what I have so far online and created a merge >> request with information about the error and an example dataset attached. >> >> >> Hopefully somebody better with VTK than I am can take a look and figure >> out what I'm missing. I tried comparing the files for Chombo against the >> original Visit source files to see if any special modifications were >> required and none are (the only changes are HDF5 related). It looks like >> the Chombo reader is from Visit 2.7.0 -- the Boxlib files I added are from >> 2.10.3, but I tried it with the Boxlib reader from Visit 2.7.0 also and >> it's the same issue. >> >> >> If anybody has a chance to take a look, I'd appreciate it. Hopefully it's >> something simple. If not, I'll try to pick it back up in a few days. I >> apologize for the hacked CMakeLists to link against the library, I will fix >> it to do it properly once everything else works! >> >> Tim >> >> >> ------------------------------ >> *From:* ParaView <paraview-boun...@paraview.org> on behalf of Gallagher, >> Timothy P <tim.gallag...@gatech.edu> >> *Sent:* Monday, August 29, 2016 12:41 PM >> >> *To:* Utkarsh Ayachit >> *Cc:* paraview@paraview.org >> *Subject:* Re: [Paraview] Status of BoxLib AMR reader >> >> >> Thanks for the quick response, the case didn't match between the two >> files and that was the issue. I'm able to use the reader to select the file >> and it sees the names of the variables in it properly, but when I hit Apply >> it throws: >> >> >> ERROR: In >> /data4/PVBoxLibTest/paraview/VTK/Common/DataModel/vtkAMRInformation.cxx, >> line 573 >> vtkAMRInformation (0x44210f0): Invalid grid description for a >> vtkUniformGrid >> >> >> I have a feeling this might get beyond my paraview knowledge to fix. >> >> >> One potential source of the problem -- what version of Visit are the >> other readers pulled from? I have the Boxlib files from the latest version, >> but looking at some of the other readers, they are from older versions. >> >> The latest date I see in the copyright for existing readers is 2013 and >> looking through the Visit Release notes, the last release in 2013 says it >> was upgraded to use VTK-6.0. >> >> >> Is it possible the bridge is based on Visit before that major VTK upgrade >> and I need to pull the reader code from a version earlier than that? >> >> >> Thanks for your help. If I can't find something I know how to fix soon, I >> can create a merge request and see if anybody else can get it the rest of >> the way. >> >> >> Tim >> >> ------------------------------ >> *From:* Utkarsh Ayachit <utkarsh.ayac...@kitware.com> >> *Sent:* Monday, August 29, 2016 12:17 PM >> *To:* Gallagher, Timothy P >> *Cc:* paraview@paraview.org >> *Subject:* Re: [Paraview] Status of BoxLib AMR reader >> >> Tim, >> >> It doesn't know what the class is. Multiple things could have gone wrong: >> 1. is there call to ADD_VISIT_READER() for the new reader? >> 2. does the case match between the XML's class="" and the name specified >> in 1? >> >> If it makes it easier, create a MR on the https://gitlab.kitware.com >> /paraview/visitbridge repo with your changes, and I can do the necessary >> fixes. >> <https://gitlab.kitware.com/paraview/visitbridge> >> ParaView / VisItBridge <https://gitlab.kitware.com/paraview/visitbridge> >> gitlab.kitware.com >> Bridge between VisIt and ParaView to use VisIt readers in ParaView. >> >> Utkarsh >> >> On Mon, Aug 29, 2016 at 12:06 PM, Gallagher, Timothy P < >> tim.gallag...@gatech.edu> wrote: >> >>> Utkarash, >>> >>> >>> Thanks, I had added it to the xml file, but I didn't reconfigure (just >>> rebuilt) so it didn't get added to the list. >>> >>> >>> I'm making some progress it seems, it is picking the right reader now. >>> But it is crashing with a rather unhelpful message: >>> >>> >>> ERROR: In >>> /data4/PVBoxLibTest/paraview/ParaViewCore/ServerImplementation/Core/vtkSIProxy.cxx, >>> line 310 >>> vtkSISourceProxy (0x3e87420): Failed to create vtkVisItBoxlib2DReader. >>> Aborting for debugging purposes. >>> >>> I thought compiling with a Debug build type would give more verbose >>> messages, but it's the same. >>> >>> >>> Is there documentation or suggestions on debugging paraview? Is there a >>> way to get more verbose output on why it isn't able to create the reader? >>> >>> >>> Thanks again, >>> >>> >>> Tim >>> >>> ------------------------------ >>> *From:* Utkarsh Ayachit <utkarsh.ayac...@kitware.com> >>> *Sent:* Monday, August 29, 2016 8:46 AM >>> >>> *To:* Gallagher, Timothy P >>> *Cc:* paraview@paraview.org >>> *Subject:* Re: [Paraview] Status of BoxLib AMR reader >>> >>> Tim, >>> >>> Did you also add it to visit_readers.xml [1]? The proxy definition >>> should also have a <hints> section like so [2]. >>> >>> Utkarsh >>> >>> [1] https://gitlab.kitware.com/paraview/visitbridge/blob/mas >>> ter/databases/visit_readers.xml >>> [2] https://gitlab.kitware.com/paraview/visitbridge/blob/mas >>> ter/databases/visit_readers.xml#L2562-2565 >>> >>> >>> >>> On Fri, Aug 26, 2016 at 6:26 PM, Gallagher, Timothy P < >>> tim.gallag...@gatech.edu> wrote: >>> >>>> I took a stab at adding the Boxlib reader from the visit source to the >>>> VisitBridge internal readers. I managed to get everything to compile and >>>> link, Paraview built fine, but I can't seem to figure out how to make >>>> Paraview aware the reader exists. >>>> >>>> >>>> There isn't an option for Boxlib in the dropdown for the file type when >>>> I try to open a file, and it doesn't appear as an available reader when I >>>> try to select the file -- although all the others from the VisitBridge >>>> appear. I missed a configuration file somewhere to make the file loading >>>> aware of the reader. >>>> >>>> >>>> Any suggestions on what I missed? I added a section in the >>>> Utilities/VisItBridge/databases/visit_readers.xml file, but that >>>> wasn't enough I guess. >>>> >>>> >>>> Thanks, >>>> >>>> >>>> Tim >>>> >>>> >>>> ------------------------------ >>>> *From:* ParaView <paraview-boun...@paraview.org> on behalf of >>>> Gallagher, Timothy P <tim.gallag...@gatech.edu> >>>> *Sent:* Friday, August 26, 2016 11:53 AM >>>> *To:* Utkarsh Ayachit >>>> >>>> *Cc:* paraview@paraview.org >>>> *Subject:* Re: [Paraview] Status of BoxLib AMR reader >>>> >>>> >>>> Hi Utkarsh, >>>> >>>> >>>> I just checked with the latest head of the git repo and when I compile >>>> with the VisitBridge, there are no readers for BoxLib built. >>>> >>>> >>>> This page lists it as supported: http://www.paraview.org/ParaVi >>>> ew/index.php/VisIt_avt_Integration >>>> >>>> >>>> But then this later one doesn't include it: http://www.paraview.org/Wi >>>> ki/VisIt_Database_Bridge >>>> >>>> >>>> I have a dataset for you, I will send it off-list. >>>> >>>> >>>> Thanks, >>>> >>>> >>>> Tim >>>> >>>> >>>> ------------------------------ >>>> *From:* Utkarsh Ayachit <utkarsh.ayac...@kitware.com> >>>> *Sent:* Friday, August 26, 2016 8:35 AM >>>> *To:* Gallagher, Timothy P >>>> *Cc:* paraview@paraview.org >>>> *Subject:* Re: [Paraview] Status of BoxLib AMR reader >>>> >>>> Tim, >>>> >>>> I am not exactly sure what's the status of the reader, but I can >>>> certainly look it up. Do you have a sample dataset also to test that >>>> it's working (or not)? >>>> >>>> Utkarsh >>>> >>>> On Thu, Aug 25, 2016 at 2:22 PM, Gallagher, Timothy P >>>> <tim.gallag...@gatech.edu> wrote: >>>> > Hi, >>>> > >>>> > >>>> > Our code is moving away from traditional structured grids towards an >>>> AMR >>>> > capability using BoxLib. That means, unfortunately, that all of the >>>> > development we have done to make our code Paraview and CoProcessing >>>> friendly >>>> > is not usable with the BoxLib file format. >>>> > >>>> > >>>> > I have seen some information on various websites about using the >>>> VisitBridge >>>> > to add the readers from Visit into Paraview, but when I build with >>>> it, the >>>> > BoxLib reader was not included in the list of formats I could use for >>>> files >>>> > -- even though it is listed online. >>>> > >>>> > >>>> > Does anybody know what the status is of the reader in PV and if it is >>>> > usable? Or is there a different format we can try to write out from >>>> our code >>>> > that would be usable? I really don't want to lose the work we've done >>>> with >>>> > PV and I would rather spend time writing code to get things working >>>> again >>>> > for PV than learn to use new software! >>>> > >>>> > >>>> > Thanks, >>>> > >>>> > >>>> > Tim >>>> > >>>> > >>>> > _______________________________________________ >>>> > Powered by www.kitware.com >>>> <http://www.kitware.com/> >>>> Kitware Inc. - leading edge, high-quality software >>>> <http://www.kitware.com/> >>>> www.kitware.com >>>> Kitware's mission is to create state-of-the-art software products and >>>> services in visualization and data processing using advanced quality >>>> software methods and ... >>>> >>>> > >>>> > Visit other Kitware open-source projects at >>>> > http://www.kitware.com/opensource/opensource.html >>>> > >>>> > Please keep messages on-topic and check the ParaView Wiki at: >>>> > http://paraview.org/Wiki/ParaView >>>> > >>>> > Search the list archives at: http://markmail.org/search/?q=ParaView >>>> > >>>> > Follow this link to subscribe/unsubscribe: >>>> > http://public.kitware.com/mailman/listinfo/paraview >>>> > >>>> >>> >>> >> >
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