Not sure what's going on. The attached script worked just fine for me.
On Thu, Mar 30, 2017 at 1:02 PM, John Haase <jhaa...@nd.edu> wrote:
> Utkarsh,
>
> Using the script attached, and the same data sets as before. I get the error
>
> Traceback (most recent call last):
>
> File "<string>", line 22, in <module>
>
> File "<string>", line 5, in RequestData
>
> File "C:\Program Files\ParaView
> 5.2.0-Qt4-OpenGL2-Windows-64bit\bin\lib\site-packages\vtk\numpy_interface\dataset_adapter.py",
> line 660, in append
>
> arrLength = narray.shape[0]
>
> IndexError: tuple index out of range
>
>
> on the last line.
>
> Regards,
>
> John R. Haase
> jhaa...@nd.edu
>
> On Thu, Mar 30, 2017 at 12:32 PM, Utkarsh Ayachit
> <utkarsh.ayac...@kitware.com> wrote:
>>
>> John,
>>
>> That's the script for a "Programmable Filter", not simply to be added
>> to your script, similar to what you're doing with `squareDiff`.
>>
>> e.g.
>>
>> myfilter = ProgrammableFilter(Input=integrateSqrVarOverSpace)
>> myfilter.Script = "...." # the script I provided.
>> myfilter.UpdatePipeline()
>> ...
>>
>> Utkarsh
>>
>> On Thu, Mar 30, 2017 at 12:09 PM, John Haase <jhaa...@nd.edu> wrote:
>> > Exploring 'integrateSqrVarOverSpace', it doesn't have a 'RowData'
>> > object.
>> >
>> > dir(integrateSqrVarOverSpace)
>> >
>> > ['CellData', 'FieldData', 'FileNameChanged', 'GetCellDataInformation',
>> > 'GetDataInformation', 'GetFieldDataInformation',
>> > 'GetPointDataInformation',
>> > 'GetProperty', 'GetPropertyValue', 'Initialize', 'InitializeFromProxy',
>> > 'Input', 'ListProperties', 'Observed', 'ObserverTag',
>> > 'OnlyReportSelectionStatistics', 'PointData', 'Port', 'SMProxy',
>> > 'Selection', 'SetPropertyWithName', 'UpdatePipeline',
>> > 'UpdatePipelineInformation', '_Proxy__ConvertArgumentsAndCall',
>> > '_Proxy__GetActiveCamera', '_Proxy__LastAttrName', '_Proxy__Properties',
>> > '__class__', '__del__', '__delattr__', '__dict__', '__doc__', '__eq__',
>> > '__format__', '__getattr__', '__getattribute__', '__getitem__',
>> > '__hash__',
>> > '__init__', '__iter__', '__module__', '__ne__', '__new__', '__reduce__',
>> > '__reduce_ex__', '__repr__', '__setattr__', '__sizeof__', '__str__',
>> > '__subclasshook__', '__weakref__', 'add_attribute']
>> >
>> >
>> > So, using the script you posted, I get the error "IndexError: tuple
>> > index
>> > out of range".
>> >
>> >
>> > Regards,
>> >
>> > John R. Haase
>> > jhaa...@nd.edu
>> >
>> > On Thu, Mar 30, 2017 at 10:35 AM, Utkarsh Ayachit
>> > <utkarsh.ayac...@kitware.com> wrote:
>> >>
>> >> Isn't that simply a sum of all the rows in the output of
>> >> integrateSqrVarOverSpace filter?
>> >>
>> >> If so, that can be done by using another ProgrammableFilter with the
>> >> following Script:
>> >>
>> >> from numpy import sum
>> >> for inTable, outTable in zip(inputs[0], output):
>> >>
>> >> for aname in inTable.RowData.keys():
>> >>
>> >> outTable.RowData.append(sum(inTable.RowData[aname]), aname)
>> >>
>> >>
>> >> Utkarsh
>> >>
>> >>
>> >>
>> >>
>> >> On Wed, Mar 29, 2017 at 1:15 PM, John Haase <jhaa...@nd.edu> wrote:
>> >>>
>> >>> Sorry, that's not what I wanted. I want to integrate the variable
>> >>> "integrateSqrVarOverSpace", over time as well.
>> >>>
>> >>> Regards,
>> >>>
>> >>> John R. Haase
>> >>> jhaa...@nd.edu
>> >>>
>> >>> On Wed, Mar 29, 2017 at 1:05 PM, Utkarsh Ayachit
>> >>> <utkarsh.ayac...@kitware.com> wrote:
>> >>>>
>> >>>> Your script worked for me for the most part with ParaView 5.3. All I
>> >>>> did
>> >>>> was added a plot view to show the results (attached). If that what
>> >>>> you were
>> >>>> looking for?
>> >>>>
>> >>>> On Wed, Mar 29, 2017 at 12:30 PM, John Haase <jhaa...@nd.edu> wrote:
>> >>>>>
>> >>>>> They are very large. I believe you should be able to access them
>> >>>>> through this link
>> >>>>>
>> >>>>> https://notredame.box.com/s/qy0p9y5jg71jwxtzfey80xiq9i9udk5s
>> >>>>>
>> >>>>> Regards,
>> >>>>>
>> >>>>> John R. Haase
>> >>>>> jhaa...@nd.edu
>> >>>>>
>> >>>>> On Wed, Mar 29, 2017 at 12:06 PM, Utkarsh Ayachit
>> >>>>> <utkarsh.ayac...@kitware.com> wrote:
>> >>>>>>
>> >>>>>> John,
>> >>>>>>
>> >>>>>> Can you send me the datafiles too (feel free to do it off the
>> >>>>>> mailing
>> >>>>>> list) so I can figure out what could be going wrong.
>> >>>>>>
>> >>>>>> Thanks
>> >>>>>> Utkarsh
>> >>>>>>
>> >>>>>> On Wed, Mar 29, 2017 at 12:01 PM, John Haase <jhaa...@nd.edu>
>> >>>>>> wrote:
>> >>>>>>>
>> >>>>>>> Hello Paraviewers,
>> >>>>>>>
>> >>>>>>> I'm trying to integrate variables over time. I found this thread
>> >>>>>>> where it had been brought up previously.
>> >>>>>>>
>> >>>>>>>
>> >>>>>>>
>> >>>>>>> http://paraview.markmail.org/search/?q=integral+over+time#query:integral%20over%20time+page:1+mid:z75bede26onth4eu+state:results
>> >>>>>>>
>> >>>>>>> However, when I try and open the state file, paraview crashes. So
>> >>>>>>> what commands do I use to do the integral over time? I'm trying to
>> >>>>>>> integrate
>> >>>>>>> a PlotSelectionOverTime filter (with row data).
>> >>>>>>>
>> >>>>>>> I'm doing this programmatically, so attached is the python script.
>> >>>>>>> I
>> >>>>>>> have so far.
>> >>>>>>>
>> >>>>>>> Regards,
>> >>>>>>>
>> >>>>>>> John R. Haase
>> >>>>>>> jhaa...@nd.edu
>> >>>>>>>
>> >>>>>>> _______________________________________________
>> >>>>>>> Powered by www.kitware.com
>> >>>>>>>
>> >>>>>>> Visit other Kitware open-source projects at
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>> >>>>>>>
>> >>>>>>> Please keep messages on-topic and check the ParaView Wiki at:
>> >>>>>>> http://paraview.org/Wiki/ParaView
>> >>>>>>>
>> >>>>>>> Search the list archives at:
>> >>>>>>> http://markmail.org/search/?q=ParaView
>> >>>>>>>
>> >>>>>>> Follow this link to subscribe/unsubscribe:
>> >>>>>>> http://public.kitware.com/mailman/listinfo/paraview
>> >>>>>>>
>> >>>>>>
>> >>>>>
>> >>>>
>> >>>
>> >>
>> >
>
>
#### import the simple module from the paraview
from paraview.simple import *
import glob, re, os
def CreateCellSelection(ids):
source = IDSelectionSource()
source.FieldType = "CELL"
sids = []
for i in ids:
sids.append(0) #proc-id
sids.append(i) #cell-id
source.IDs = sids
return source
path = 'C:\\Users\\John\\Box Sync\\paraview\\'
files = ['SteadyState_out.e', 'FinalCycle_out.e' ]
reader = []
for idx, fl in enumerate(files):
reader.append(ExodusIIReader(FileName=path+fl))
reader[idx].GenerateObjectIdCellArray = 1
reader[idx].GenerateGlobalElementIdArray = 1
ElementVariables = reader[idx].ElementVariables.Available
ElementVariables.remove('x')
reader[idx].ElementVariables = ElementVariables
reader[idx].PointVariables = reader[idx].PointVariables.Available
reader[idx].ElementBlocks = reader[idx].ElementBlocks.Available
reader[-1].ElementVariables = reader[-1].ElementVariables.Available
temporalShift = []
for idx, r in enumerate(reader):
temporalShift.append(TemporalShiftScale(Input=r))
temporalShift[idx].PreShift = -r.TimestepValues[0]
squareDiff = ProgrammableFilter(Input=temporalShift)
script = "output.CellData.append(inputs[-1].CellData['x'], 'x')\n"
for var in reader[0].ElementVariables:
script=script + "output.CellData.append((inputs[0].CellData['" + var + "'] - inputs[1].CellData['" + var + "'])**2 , '" + var + "')\n"
squareDiff.Script=script
squareDiff.UpdatePipeline()
integrateVariables = IntegrateVariables(Input=squareDiff)
selection = CreateCellSelection(ids=[0])
integrateSqrVarOverSpace = PlotSelectionOverTime(Input=integrateVariables, Selection=selection)
integrateSqrVarOverSpace.OnlyReportSelectionStatistics = 0
integrateSqrVarOverSpace.UpdatePipeline()
integrateSqrVarOverST = ProgrammableFilter(Input=integrateSqrVarOverSpace)
integrateSqrVarOverST.Script = """
from numpy import sum
for inTable, outTable in zip(inputs[0], output):
for aname in inTable.RowData.keys():
outTable.RowData.append(sum(inTable.RowData[aname]), aname)
"""
integrateSqrVarOverST.UpdatePipeline()
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