Oh btw, I found another strange behavior while chasing previous "bug":
on a clean and new workspace I can't get PDT to save some of my new preferences 
!
For example if I choose a new formatter under Preferences -> PHP -> Code Style 
-> Formatter
or when I check "Remove trailing whitespace" and "Format source code" under 
Preferences -> PHP -> Editor -> Save Actions
these options will work so long eclipse is started, but once I restart eclipse, 
these options will be undone (ie not saved) !

Am I the only one to have this problem?

Thierry.

From: thierrybl...@msn.com
To: pdt-dev@eclipse.org
Date: Wed, 4 May 2016 16:23:07 +0000
Subject: Re: [pdt-dev] 4.0-M7 Milestone




Thank you ! I'm glad to help ;) And thank you for your patience ;)

Thierry.

From: bartlomie...@zend.com
To: pdt-dev@eclipse.org
Date: Wed, 4 May 2016 16:03:01 +0000
Subject: Re: [pdt-dev] 4.0-M7 Milestone






Thierry, your help is invaluable :) You pointed me into the right direction. I 
didn't check the scenario with dependent projects but it looks like it is the 
root cause of the problems.



Thanks again for your help and have a nice holiday leave! :) 



On 5/4/2016 5:53 PM, thierry blind wrote:



Maybe in my case I simply though it does loop forever, because I had a 
looooooot of big projects depending on same big project "A" (by doing 
Properties -> PHP -> Include Path -> Projects -> Add -> projet A).

And it took forever with a big amount of place taken by 
org.eclipse.dltk.core.index.lucene

Strangely it was much faster on a new and clean workspace :S

If I have for example 5 projects that depends on a common project "A", the 
project "A" will then be indexed 5 times.

In my case with H2 indexer it took 1.1 GB, with the Lucene indexer it takes 
more than 3GB on a safe and new workspace!

So really sorry for pointing in the wrong direction :/

And yes there is still room for improvements ;)





From: bartlomie...@zend.com

To: pdt-dev@eclipse.org

Date: Wed, 4 May 2016 15:39:01 +0000

Subject: Re: [pdt-dev] 4.0-M7 Milestone



OK, great. For now I have found something else while using your workspace that 
is not OK. Even if indexing finishes OK there are some source modules being 
re-indexed while closing/restarting IDE. At least it might give me some clues 
what might happened as I
 think that the problem is related somehow to storing/reading source files 
timestamps as this is the place where some redundant indexing might be 
triggered.



On 5/4/2016 5:07 PM, thierry blind wrote:



I'll repackage another workspace and tell you when it's available ok ? Maybe I 
removed too much...





From: 
bartlomie...@zend.com

To: 
pdt-dev@eclipse.org

Date: Wed, 4 May 2016 15:00:53 +0000

Subject: Re: [pdt-dev] 4.0-M7 Milestone



I used your workspace in my dev env but unfortunately indexer finished without 
a problem. It only took some time to close the PDT running threads (after 
closing IDE) as Lucene was merging and closing huge indexes (for about 45-60 
seconds) but it finished it
 gracefully. Anyway I will try to do my best to reproduce it ;)



On 5/4/2016 4:13 PM, thierry blind wrote:



With pleasure ;)

You can send it at my email address: 
thierrybl...@msn.com

Kaloyan, if you're also interested, tell me ok?



I really hope you will also reproduce this bug on your eclipse, I will go crazy 
if I'm the only one to have it! lol

Of course each time you start your eclipse you have to delete 
.metadata/org.eclipse.dltk.core.index.lucene



And some additional infos on what's installed in my eclipse Mars.2 Release:



  Eclipse IDE for Java EE Developers    4.5.2.20160218-0600    epp.package.jee  
  null

  JavaHL 1.7.9 Win32 Binaries (Optional)    5.0.0.I20150529-1700    
org.polarion.eclipse.team.svn.connector.javahl17.win32.feature.group    
Polarion Software

  PDT Extensions    0.22.2.201604260159    
org.pdtextensions.feature.feature.group   

http://pdt-extensions.org

  PHP CodeSniffer    1.3.0.R20111119000000    
org.phpsrc.eclipse.pti.tools.codesniffer.feature.group    Sven Kiera

  PHP Development Tools (PDT)    4.0.0.201605031251    
org.eclipse.php.feature.group    Eclipse PDT

  PHP Development Tools (PDT) Mylyn Integration    4.0.0.201605031251    
org.eclipse.php.mylyn.feature.group    Eclipse PDT

  PHP Development Tools (PDT) Source Code    4.0.0.201605031251    
org.eclipse.php.source.feature.group    Eclipse PDT

  PHP Tool Integration Core    1.6.0.R20111119000000    
org.phpsrc.eclipse.pti.core.feature.group    Sven Kiera

  PHPUnit    0.8.0.R20111119000000    
org.phpsrc.eclipse.pti.tools.phpunit.feature.group    Sven Kiera

  PMD Plug-in    4.0.8.v20151204-2156    
net.sourceforge.pmd.eclipse.feature.group    PMD Project

  Subversive SVN Team Provider    3.0.4.I20160131-1700    
org.eclipse.team.svn.feature.group    Eclipse.org



Thierry.





From: 
bartlomie...@zend.com

To: 
pdt-dev@eclipse.org

Date: Wed, 4 May 2016 14:02:11 +0000

Subject: Re: [pdt-dev] 4.0-M7 Milestone



That would be great! Thank you one more time for all the feedback! This zipped 
workspace would be very appreciated, I will send you soon my private address 
that you can send the google drive link at.



On 5/4/2016 3:50 PM, thierry blind wrote:



It won't be possible at work for Skype sorry :S

And I followed progress bar since first try ;)

Here is what happen : I have PHP projects A, B, C and D. Projects B, C and D 
depend on project A.

So indexer starts with project A, continues with project B (only few files), 
goes back to A, does a little bit from C, goes back to A, does a little bit 
from D, and then
 it seems it only loops inside of A. It seems that if I only have project A 
open in my workspace, indexer works correctly and then I can open project B and 
indexer still works correctly, and so on...



I'll try to exclude most of the projects of my workspace , zip my workspace and 
share it on my google drive, would it be ok?

The workspace will look awful with lot of broken things, but mainly it will 
continue to loop forever (hopefully also for you!), it's the most important no 
? ;)

Of course there will still be private stuff inside, please give me a private 
email address, so I can send you the google drive link ;)



Thierry.





From: 
bartlomie...@zend.com

To: 
pdt-dev@eclipse.org

Date: Wed, 4 May 2016 11:59:33 +0000

Subject: Re: [pdt-dev] 4.0-M7 Milestone



Unfortunately nothing special in the thread dumps. Could you possibly take a 
look at the indexing progress bar in "Progress" view while having this infinite 
indexing? Does the names of the files being indexed change or progress stuck 
only on a one particular
 file? Maybe it would be possible for you to arrange some short Skype call so 
you can show me what is going on?



On 5/4/2016 1:38 PM, thierry blind wrote:



Here you have :)





From: 
bartlomie...@zend.com

To: 
pdt-dev@eclipse.org

Date: Wed, 4 May 2016 09:39:25 +0000

Subject: Re: [pdt-dev] 4.0-M7 Milestone



Thierry, could you possibly make some thread dump in a time when there is this 
infinite looping? I think that it might tell me something more.



On 5/4/2016 11:32 AM, thierry blind wrote:



Yes ;)





From: 
bartlomie...@zend.com

To: 
pdt-dev@eclipse.org

Date: Wed, 4 May 2016 09:29:49 +0000

Subject: Re: [pdt-dev] 4.0-M7 Milestone



Did you delete "org.eclipse.dltk.core.index.lucene" from .metadata before 
second run?



On 5/4/2016 11:15 AM, thierry blind wrote:



Second run, same loop problem, I had to kill eclipse, all errors that you see 
in log files happen when closing eclipse.



I'll create a fresh new workspace, copy a set of my PHP projects, import them 
and see what indexer does...



Thierry.





From: 
thierrybl...@msn.com

To: 
pdt-dev@eclipse.org

Date: Wed, 4 May 2016 08:29:03 +0000

Subject: Re: [pdt-dev] 4.0-M7 Milestone




I'll give a try and tell you ;)





From: 
bartlomie...@zend.com

To: 
pdt-dev@eclipse.org

Date: Wed, 4 May 2016 08:24:21 +0000

Subject: Re: [pdt-dev] 4.0-M7 Milestone



Is it still the same after closing PDT, deleting 
"org.eclipse.dltk.core.index.lucene" and starting IDE once again?



On 5/4/2016 10:17 AM, thierry blind wrote:



Hi Bart,

I killed my eclipse session yesterday evening, it was looping ;)

I've attached my logs ! There are full of errors :S



Thierry.





From: 
bartlomie...@zend.com

To: 
pdt-dev@eclipse.org

Date: Tue, 3 May 2016 18:01:36 +0000

Subject: Re: [pdt-dev] 4.0-M7 Milestone



Hi Guys,



First of all thank you Thierry for spending some time on testing new indexer. 
The problem that you found doesn't look good as you already said. I will try to 
find the root cause as fast as possible. Could you possibly attach your entire 
.log file?



Greetings,

Bart



On 5/3/2016 7:23 PM, thierry blind wrote:



Hi Kaloyan,

I've restarted everything (no more errors for now), first time it was probably 
my fault (I had an eclipse zombie process when I started a new eclipse 
instance).

I'm working on an existing workspace for now.

But there is still something very very wrong here.

I have very big projects (mainly because I use ORMs like Propel to generate a 
lot of PHP classes), and it seems that the indexer loops over same (Propel) 
files again and again.


The size of the "org.eclipse.dltk.core.index.lucene" directory is much bigger 
than the "org.eclipse.dltk.core.index.sql.h2 directory" !!!!

And indexing is still not ended... I will probably stop it before it fills my 
hard drive.

I will continue tests tomorrow, sadly tomorrow will be the last day I can do 
some tests before next 2-3 weeks :/



Thierry.





From: 
kaloya...@zend.com

To: 
pdt-dev@eclipse.org

Date: Tue, 3 May 2016 16:44:15 +0000

Subject: Re: [pdt-dev] 4.0-M7 Milestone





Hi Thierry,



Does the same happen in a fresh new workspace?



Kaloyan






From:

pdt-dev-boun...@eclipse.org

<pdt-dev-boun...@eclipse.org> on behalf of thierry blind

<thierrybl...@msn.com>

Sent: Tuesday, May 3, 2016 7:29 PM

To: PDT Developers

Subject: Re: [pdt-dev] 4.0-M7 Milestone
 


Hi Kaloyan,

I just updated to latest PDT snapshot 4.0.0.201605031251 (from 
http://download.eclipse.org/tools/pdt/updates/latest-nightly),
 but I can't get the Lucene indexer to work.

Before filling a bug report I wanted to know what I do wrong:

1) I deleted .metadata\.plugins\org.eclipse.dltk.core.index.sql.h2 from my 
workspace

2) I started eclipse, now I get an infinite loop of following errors:



eclipse.buildId=4.5.2.M20160212-1500

java.version=1.8.0_66

java.vendor=Oracle Corporation

BootLoader constants: OS=win32, ARCH=x86, WS=win32, NL=fr_FR

Framework arguments:  -product org.eclipse.epp.package.jee.product

Command-line arguments:  -os win32 -ws win32 -arch x86 -product 
org.eclipse.epp.package.jee.product



org.eclipse.dltk.core.index.lucene

Error

Tue May 03 18:16:00 CEST 2016

Lock obtain timed out: 
NativeFSLock@C:\workspace\.metadata\.plugins\org.eclipse.dltk.core.index.lucene\index\bc981875-9762-4936-b1d8-fbd9b4d8d2a3\timestamps\write.lock



org.apache.lucene.store.LockObtainFailedException: Lock obtain timed out: 
NativeFSLock@C:\regroup\workspace10\.metadata\.plugins\org.eclipse.dltk.core.index.lucene\index\bc981875-9762-4936-b1d8-fbd9b4d8d2a3\timestamps\write.lock

    at org.apache.lucene.store.Lock.obtain(Lock.java:89)

    at org.apache.lucene.index.IndexWriter.<init>(IndexWriter.java:780)

    at 
org.eclipse.dltk.internal.core.index.lucene.IndexContainer.getTimestampsWriter(IndexContainer.java:128)

    at 
org.eclipse.dltk.internal.core.index.lucene.IndexContainer.delete(IndexContainer.java:193)

    at 
org.eclipse.dltk.internal.core.index.lucene.LuceneManager.delete(LuceneManager.java:225)

    at 
org.eclipse.dltk.internal.core.index.lucene.LuceneIndexer.indexDocument(LuceneIndexer.java:161)

    at 
org.eclipse.dltk.internal.core.index2.SourceModulesRequest.run(SourceModulesRequest.java:81)

    at 
org.eclipse.dltk.core.search.indexing.AbstractJob.execute(AbstractJob.java:80)

    at 
org.eclipse.dltk.internal.core.search.processing.JobManager.run(JobManager.java:473)

    at java.lang.Thread.run(Thread.java:745)



-------------------------------------------------------------------------------------------------------------



eclipse.buildId=4.5.2.M20160212-1500

java.version=1.8.0_66

java.vendor=Oracle Corporation

BootLoader constants: OS=win32, ARCH=x86, WS=win32, NL=fr_FR

Framework arguments:  -product org.eclipse.epp.package.jee.product

Command-line arguments:  -os win32 -ws win32 -arch x86 -product 
org.eclipse.epp.package.jee.product



org.eclipse.dltk.core.index.lucene

Error

Tue May 03 18:15:42 CEST 2016

null



java.lang.NullPointerException

    at 
org.eclipse.dltk.internal.core.index.lucene.IndexContainer.delete(IndexContainer.java:193)

    at 
org.eclipse.dltk.internal.core.index.lucene.LuceneManager.delete(LuceneManager.java:225)

    at 
org.eclipse.dltk.internal.core.index.lucene.LuceneIndexer.indexDocument(LuceneIndexer.java:161)

    at 
org.eclipse.dltk.internal.core.index2.SourceModulesRequest.run(SourceModulesRequest.java:81)

    at 
org.eclipse.dltk.core.search.indexing.AbstractJob.execute(AbstractJob.java:80)

    at 
org.eclipse.dltk.internal.core.search.processing.JobManager.run(JobManager.java:473)

    at java.lang.Thread.run(Thread.java:745)



-------------------------------------------------------------------------------------------------------------



Thierry.





From: 
thierrybl...@msn.com

To: 
pdt-dev@eclipse.org

Date: Tue, 3 May 2016 15:17:41 +0000

Subject: Re: [pdt-dev] 4.0-M7 Milestone



Hope they enjoy their holidays, I will have mine next week ;)

I will test the Lucene indexer with great curiosity ;)



Thierry.





From: 
kaloya...@zend.com

To: 
pdt-dev@eclipse.org

Date: Tue, 3 May 2016 15:07:13 +0000

Subject: Re: [pdt-dev] 4.0-M7 Milestone





Thanks, Thierry!





I guess the rest are enjoying the public holiday in Poland and are not working 
hard on PDT






I went ahead and copied the latest nightly to this location:

http://download.eclipse.org/tools/pdt/updates/4.0-m7







I am pushed it to the SimRel: https://git.eclipse.org/r/71914/





Kaloyan







From:

pdt-dev-boun...@eclipse.org

<pdt-dev-boun...@eclipse.org> on behalf of thierry blind

<thierrybl...@msn.com>

Sent: Tuesday, May 3, 2016 5:07:26 PM

To: PDT Developers

Subject: Re: [pdt-dev] 4.0-M7 Milestone
 


Hi,

for me it should be ok ;)





From: 
kaloya...@zend.com

To: 
pdt-dev@eclipse.org

Date: Tue, 3 May 2016 13:44:10 +0000

Subject: [pdt-dev] 4.0-M7 Milestone




Hi,





I'd like to declare the 4.0-M7 milestone and go through the SimRel validation 
to ensure that everything is correct with the new Lucene indexer.





Any last minute changes?





Kaloyan




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