On Mon, May 9, 2011 at 9:35 PM, Barry Smith <bsmith at mcs.anl.gov> wrote:
> > There doesn't seem to be a systematic way to run all the sieve examples. > For example in src/dm/impls/mesh/examples/tutorials and tests there are no > TESTEXAMPLES_XXXX variables listing all the examples. In the tutorial > directory a few are listed in TESTEXAMPLES_SIEVE but they don't compile. > > How can we test sieve for a release without the right infrastructure in > place? > We can't. That is being fixed now. There is at least one example that halfway runs with vanilla PETSc. SNES ex12. I am fixing it up to do everything right, for Dirichlet and Neumann. Once that is done, I will fix it for higher order. Matt > Barry > > > barry-smiths-macbook-pro:tutorials barrysmith$ make testexamples_SIEVE > --------------Error detected during compile or link!----------------------- > See http://www.mcs.anl.gov/petsc/petsc-2/documentation/faq.html > /Users/barrysmith/Src/petsc-dev/arch-sieve/bin/mpicxx -o ex1.o -c -Wall > -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g > -I/Users/barrysmith/Src/petsc-dev/include > -I/Users/barrysmith/Src/petsc-dev/arch-sieve/include > -I/Users/barrysmith/Src/petsc-dev/include/sieve -I/opt/local/include -I/src > -I. -DDIMENSION=3 -DNUM_TERMS=10 -DNUM_COEFFICIENTS=10*10*3 > -D__INSDIR__=src/dm/mesh/examples/tutorials/ ex1.c > ex1.c:35:24: error: petscmesh.hh: No such file or directory > ex1.c:36:32: error: petscmesh_formats.hh: No such file or directory > ex1.c:40: error: ?ALE? has not been declared > ex1.c:46: error: ?PetscInt? does not name a type > ex1.c:47: error: ?PetscBool? does not name a type > ex1.c:51: error: ?PetscBool? does not name a type > ex1.c:52: error: ?PetscBool? does not name a type > ex1.c:53: error: ?PetscBool? does not name a type > ex1.c:54: error: ?PetscBool? does not name a type > ex1.c:56: error: ?PetscBool? does not name a type > ex1.c:57: error: ?PetscBool? does not name a type > ex1.c:58: error: ?SectionInt? does not name a type > ex1.c:59: error: ?PetscBool? does not name a type > ex1.c:60: error: ?SectionInt? does not name a type > ex1.c:63: error: ?PetscErrorCode? does not name a type > ex1.c:67: error: ?PetscErrorCode? does not name a type > ex1.c:152: error: ?PetscErrorCode? does not name a type > ex1.c:176: error: ?PetscErrorCode? does not name a type > ex1.c:203: error: ?PetscErrorCode? does not name a type > ex1.c:241: error: ?PetscErrorCode? does not name a type > ex1.c:275: error: ?PetscErrorCode? does not name a type > ex1.c: In function ?int main(int, char**)?: > ex1.c:333: error: ?MPI_Comm? was not declared in this scope > ex1.c:333: error: expected `;' before ?comm? > ex1.c:335: error: ?PetscErrorCode? was not declared in this scope > ex1.c:335: error: expected `;' before ?ierr? > ex1.c:337: error: ?PetscFunctionBegin? was not declared in this scope > ex1.c:338: error: ?ierr? was not declared in this scope > ex1.c:338: error: ?PetscInitialize? was not declared in this scope > ex1.c:338: error: ?CHKERRQ? was not declared in this scope > ex1.c:339: error: ?comm? was not declared in this scope > ex1.c:339: error: ?PETSC_COMM_WORLD? was not declared in this scope > ex1.c:342: error: ?Mesh? was not declared in this scope > ex1.c:342: error: expected `;' before ?mesh? > ex1.c:344: error: ?ProcessOptions? was not declared in this scope > ex1.c:345: error: ?mesh? was not declared in this scope > ex1.c:345: error: ?CreateMesh? was not declared in this scope > ex1.c:346: error: ?DistributeMesh? was not declared in this scope > ex1.c:347: error: ?OutputVTK? was not declared in this scope > ex1.c:349: error: ?struct Options? has no member named ?doPartition? > ex1.c:350: error: ?struct Options? has no member named ?partition? > ex1.c:350: error: ?SectionIntDestroy? was not declared in this scope > ex1.c:352: error: ?MeshDestroy? was not declared in this scope > ex1.c:353: error: expected type-specifier before ?ALE? > ex1.c:353: error: expected `)' before ?::? token > ex1.c:353: error: expected `{' before ?::? token > ex1.c:353: error: ?::Exception? has not been declared > ex1.c:353: error: expected `;' before ?e? > ex1.c:357: error: ?PetscFinalize? was not declared in this scope > ex1.c:358: error: ?PetscFunctionReturn? was not declared in this scope > make[1]: [ex1.o] Error 1 (ignored) > /Users/barrysmith/Src/petsc-dev/arch-sieve/bin/mpicxx > -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress > -Wl,-commons,use_dylibs -Wl,-search_paths_first > -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress > -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings > -Wno-strict-aliasing -Wno-unknown-pragmas -g -o ex1 ex1.o > -L/Users/barrysmith/Src/petsc-dev/arch-sieve/lib -lpetsc -L/usr/X11R6/lib > -lX11 -llapack -lblas -L/usr/lib/gcc/i686-apple-darwin10/4.2.1/x86_64 > -L/usr/lib/i686-apple-darwin10/4.2.1 > -L/usr/lib/gcc/i686-apple-darwin10/4.2.1 -ldl -lpmpich -lmpich -lopa -lmpl > -lpthread -lSystem -lmpichf90 -lgfortran > -L/usr/local/lib/gcc/x86_64-apple-darwin10.4.0/4.6.0 -L/usr/local/lib > -lgfortran -lgcc_ext.10.5 -lmpichcxx -lstdc++ -lmpichcxx -lstdc++ -ldl > -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -ldl > i686-apple-darwin10-g++-4.2.1: ex1.o: No such file or directory > make[1]: [ex1] Error 1 (ignored) > /bin/rm -f -f ex1.o > /usr/bin/diff: testMesh.lcon: No such file or directory > Possible problem with ex1_1, diffs above > /usr/bin/diff: testMesh.nodes: No such file or directory > Possible problem with ex1_1, diffs above > /usr/bin/diff: testMesh.lcon: No such file or directory > Possible problem with ex1_2, diffs above > /usr/bin/diff: testMesh.nodes: No such file or directory > Possible problem with ex1_2, diffs above > /usr/bin/diff: testMesh.lcon: No such file or directory > Possible problem with ex1_3, diffs above > /usr/bin/diff: testMesh.nodes: No such file or directory > Possible problem with ex1_3, diffs above > /usr/bin/diff: data/bm1b/bm1b.0.connect: No such file or directory > /usr/bin/diff: testMesh.0.connect: No such file or directory > Possible problem with ex1_4, diffs above > /usr/bin/diff: data/bm1b/bm1b.0.coord: No such file or directory > /usr/bin/diff: testMesh.0.coord: No such file or directory > Possible problem with ex1_4, diffs above > /usr/bin/diff: data/bm1b/bm1b.1.connect: No such file or directory > /usr/bin/diff: testMesh.1.connect: No such file or directory > Possible problem with ex1_4, diffs above > /usr/bin/diff: data/bm1b/bm1b.1.coord: No such file or directory > /usr/bin/diff: testMesh.1.coord: No such file or directory > Possible problem with ex1_4, diffs above > /usr/bin/diff: data/bm1b/bm1b.2.connect: No such file or directory > /usr/bin/diff: testMesh.2.connect: No such file or directory > Possible problem with ex1_4, diffs above > /usr/bin/diff: data/bm1b/bm1b.2.coord: No such file or directory > /usr/bin/diff: testMesh.2.coord: No such file or directory > Possible problem with ex1_4, diffs above > /usr/bin/diff: data/bm1b/bm1b.3.connect: No such file or directory > /usr/bin/diff: testMesh.3.connect: No such file or directory > Possible problem with ex1_4, diffs above > /usr/bin/diff: data/bm1b/bm1b.3.coord: No such file or directory > /usr/bin/diff: testMesh.3.coord: No such file or directory > Possible problem with ex1_4, diffs above > /usr/bin/diff: data/bm1b/bm1b.4.connect: No such file or directory > /usr/bin/diff: testMesh.4.connect: No such file or directory > Possible problem with ex1_4, diffs above > /usr/bin/diff: data/bm1b/bm1b.4.coord: No such file or directory > /usr/bin/diff: testMesh.4.coord: No such file or directory > Possible problem with ex1_4, diffs above > --------------Error detected during compile or link!----------------------- > See http://www.mcs.anl.gov/petsc/petsc-2/documentation/faq.html > /Users/barrysmith/Src/petsc-dev/arch-sieve/bin/mpicxx -o ex2.o -c -Wall > -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -g > -I/Users/barrysmith/Src/petsc-dev/include > -I/Users/barrysmith/Src/petsc-dev/arch-sieve/include > -I/Users/barrysmith/Src/petsc-dev/include/sieve -I/opt/local/include -I/src > -I. -DDIMENSION=3 -DNUM_TERMS=10 -DNUM_COEFFICIENTS=10*10*3 > -D__INSDIR__=src/dm/mesh/examples/tutorials/ ex2.c > ex2.c:20:23: error: petscmesh.h: No such file or directory > ex2.c:22:38: error: ../src/dm/mesh/meshpcice.h: No such file or directory > ex2.c:42: error: type/value mismatch at argument 1 in template parameter > list for ?template<class X, class A> class ALE::Obj? > ex2.c:42: error: expected a type, got ?Mesh? > ex2.c:42: error: template argument 2 is invalid > ex2.c:43: error: type/value mismatch at argument 1 in template parameter > list for ?template<class X, class A> class ALE::Obj? > ex2.c:43: error: expected a type, got ?Mesh? > ex2.c:43: error: template argument 2 is invalid > ex2.c:45: error: ?Mesh? has not been declared > ex2.c:46: error: ?Mesh? was not declared in this scope > ex2.c:46: error: ?Mesh? was not declared in this scope > ex2.c:46: error: expected primary-expression before ?,? token > ex2.c:46: error: expected primary-expression before ?*? token > ex2.c:46: error: expected primary-expression before ?)? token > ex2.c:46: error: initializer expression list treated as compound expression > ex2.c:47: error: ?Mesh? was not declared in this scope > ex2.c:48: error: ?Mesh? was not declared in this scope > ex2.c:48: error: expected primary-expression before ?,? token > ex2.c:48: error: expected primary-expression before ?*? token > ex2.c:48: error: expected primary-expression before ?)? token > ex2.c:48: error: initializer expression list treated as compound expression > ex2.c:49: error: ?Mesh? was not declared in this scope > ex2.c:49: error: expected primary-expression before ?,? token > ex2.c:49: error: expected primary-expression before ?*? token > ex2.c:49: error: expected primary-expression before ?)? token > ex2.c:49: error: initializer expression list treated as compound expression > ex2.c:50: error: ?Mesh? was not declared in this scope > ex2.c:50: error: expected primary-expression before ?*? token > ex2.c:50: error: expected primary-expression before ?)? token > ex2.c:50: error: initializer expression list treated as compound expression > ex2.c: In function ?int main(int, char**)?: > ex2.c:65: error: ?Mesh? was not declared in this scope > ex2.c:65: error: expected `;' before ?meshBoundary? > ex2.c:66: error: expected `;' before ?mesh? > ex2.c:69: error: ?meshBoundary? was not declared in this scope > ex2.c:70: error: ?mesh? was not declared in this scope > ex2.c:70: error: ?CreateMesh? cannot be used as a function > ex2.c:71: error: ?DistributeMesh? cannot be used as a function > ex2.c:72: error: ?RefineMesh? cannot be used as a function > ex2.c:73: error: ?OutputVTK? cannot be used as a function > ex2.c:74: error: ?MeshDestroy? was not declared in this scope > ex2.c: At global scope: > ex2.c:137: error: type/value mismatch at argument 1 in template parameter > list for ?template<class X, class A> class ALE::Obj? > ex2.c:137: error: expected a type, got ?Mesh? > ex2.c:137: error: template argument 2 is invalid > ex2.c: In function ?PetscErrorCode CreateSquareBoundary(const int&)?: > ex2.c:148: error: ?template<class IndexType, class ScalarType> class > ALE::Mesh? used without template parameters > ex2.c:148: error: expected initializer before ?patch? > ex2.c:151: error: ?template<class IndexType, class ScalarType> class > ALE::Mesh? used without template parameters > ex2.c:151: error: expected `;' before ?vertices? > ex2.c:152: error: template argument 1 is invalid > ex2.c:152: error: template argument 2 is invalid > ex2.c:152: error: invalid type in declaration before ?=? token > ex2.c:152: error: expected type-specifier > ex2.c:152: error: invalid conversion from ?int*? to ?int? > ex2.c:152: error: expected ?,? or ?;? > ex2.c:153: error: template argument 1 is invalid > ex2.c:153: error: template argument 2 is invalid > ex2.c:153: error: invalid type in declaration before ?=? token > ex2.c:153: error: expected type-specifier > ex2.c:153: error: invalid conversion from ?int*? to ?int? > ex2.c:153: error: expected ?,? or ?;? > ex2.c:156: error: base operand of ?->? is not a pointer > ex2.c:157: error: ?template<class IndexType, class ScalarType> class > ALE::Mesh? used without template parameters > ex2.c:157: error: expected `;' before ?edge? > ex2.c:161: error: ?vertices? was not declared in this scope > ex2.c:161: error: ?template<class IndexType, class ScalarType> class > ALE::Mesh? used without template parameters > ex2.c:164: error: ?edge? was not declared in this scope > ex2.c:164: error: ?template<class IndexType, class ScalarType> class > ALE::Mesh? used without template parameters > ex2.c:165: error: base operand of ?->? is not a pointer > ex2.c:165: error: ?vertices? was not declared in this scope > ex2.c:166: error: base operand of ?->? is not a pointer > ex2.c:168: error: ?edge? was not declared in this scope > ex2.c:168: error: ?template<class IndexType, class ScalarType> class > ALE::Mesh? used without template parameters > ex2.c:169: error: base operand of ?->? is not a pointer > ex2.c:169: error: ?vertices? was not declared in this scope > ex2.c:170: error: base operand of ?->? is not a pointer > ex2.c:171: error: ?template<class IndexType, class ScalarType> class > ALE::Mesh? used without template parameters > ex2.c:172: error: base operand of ?->? is not a pointer > ex2.c:173: error: base operand of ?->? is not a pointer > ex2.c:174: error: ?template<class IndexType, class ScalarType> class > ALE::Mesh? used without template parameters > ex2.c:175: error: base operand of ?->? is not a pointer > ex2.c:176: error: base operand of ?->? is not a pointer > ex2.c:177: error: ?template<class IndexType, class ScalarType> class > ALE::Mesh? used without template parameters > ex2.c:178: error: base operand of ?->? is not a pointer > ex2.c:179: error: base operand of ?->? is not a pointer > ex2.c:181: error: base operand of ?->? is not a pointer > ex2.c:182: error: base operand of ?->? is not a pointer > ex2.c:182: error: ?patch? was not declared in this scope > ex2.c:183: error: base operand of ?->? is not a pointer > ex2.c:184: error: base operand of ?->? is not a pointer > ex2.c:185: error: ?SieveBuilder? is not a member of ?ALE::New? > ex2.c:185: error: ?template<class IndexType, class ScalarType> class > ALE::Mesh? used without template parameters > ex2.c:185: error: ?::buildCoordinates? has not been declared > ex2.c:185: error: base operand of ?->? is not a pointer > ex2.c:187: error: template argument 1 is invalid > ex2.c:187: error: template argument 2 is invalid > ex2.c:187: error: invalid type in declaration before ?=? token > ex2.c:187: error: base operand of ?->? is not a pointer > ex2.c:189: error: base operand of ?->? is not a pointer > ex2.c:191: error: base operand of ?->? is not a pointer > ex2.c:194: error: base operand of ?->? is not a pointer > ex2.c: At global scope: > ex2.c:213: error: type/value mismatch at argument 1 in template parameter > list for ?template<class X, class A> class ALE::Obj? > ex2.c:213: error: expected a type, got ?Mesh? > ex2.c:213: error: template argument 2 is invalid > ex2.c:345: error: ?Mesh? has not been declared > ex2.c: In function ?PetscErrorCode CreateMeshBoundary(MPI_Comm, int*, > Options*)?: > ex2.c:347: error: type/value mismatch at argument 1 in template parameter > list for ?template<class X, class A> class ALE::Obj? > ex2.c:347: error: expected a type, got ?Mesh? > ex2.c:347: error: template argument 2 is invalid > ex2.c:347: error: invalid type in declaration before ?;? token > ex2.c:351: error: ?MeshCreate? was not declared in this scope > ex2.c:354: error: base operand of ?->? is not a pointer > ex2.c:355: error: template argument 1 is invalid > ex2.c:355: error: template argument 2 is invalid > ex2.c:355: error: invalid type in declaration before ?=? token > ex2.c:355: error: base operand of ?->? is not a pointer > ex2.c:356: error: template argument 1 is invalid > ex2.c:356: error: template argument 2 is invalid > ex2.c:356: error: invalid type in declaration before ?=? token > ex2.c:356: error: base operand of ?->? is not a pointer > ex2.c:357: error: template argument 1 is invalid > ex2.c:357: error: template argument 2 is invalid > ex2.c:357: error: invalid type in declaration before ?=? token > ex2.c:357: error: base operand of ?->? is not a pointer > ex2.c:358: error: template argument 1 is invalid > ex2.c:358: error: template argument 2 is invalid > ex2.c:358: error: invalid type in declaration before ?=? token > ex2.c:358: error: base operand of ?->? is not a pointer > ex2.c:360: error: ?template<class IndexType, class ScalarType> class > ALE::Mesh? used without template parameters > ex2.c:360: error: expected `;' before ?v_iter? > ex2.c:360: error: ?v_iter? was not declared in this scope > ex2.c:360: error: base operand of ?->? is not a pointer > ex2.c:361: error: base operand of ?->? is not a pointer > ex2.c:363: error: ?template<class IndexType, class ScalarType> class > ALE::Mesh? used without template parameters > ex2.c:363: error: expected `;' before ?e_iter? > ex2.c:363: error: ?e_iter? was not declared in this scope > ex2.c:363: error: base operand of ?->? is not a pointer > ex2.c:364: error: base operand of ?->? is not a pointer > ex2.c:373: error: ?template<class Mesh> class ALE::MeshBuilder? used > without template parameters > ex2.c:375: error: expected type-specifier > ex2.c:375: error: invalid conversion from ?int*? to ?int? > ex2.c:375: error: expected `;' > ex2.c:382: error: base operand of ?->? is not a pointer > ex2.c:384: error: ?MeshSetMesh? was not declared in this scope > ex2.c: At global scope: > ex2.c:390: error: redefinition of ?PetscErrorCode CreateMesh? > ex2.c:46: error: ?PetscErrorCode CreateMesh? previously defined here > ex2.c:390: error: ?Mesh? was not declared in this scope > ex2.c:390: error: ?Mesh? was not declared in this scope > ex2.c:390: error: ?mesh? was not declared in this scope > ex2.c:390: error: expected primary-expression before ?*? token > ex2.c:390: error: ?options? was not declared in this scope > make[1]: [ex2.o] Error 1 (ignored) > /Users/barrysmith/Src/petsc-dev/arch-sieve/bin/mpicxx > -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress > -Wl,-commons,use_dylibs -Wl,-search_paths_first > -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress > -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings > -Wno-strict-aliasing -Wno-unknown-pragmas -g -o ex2 ex2.o > -L/Users/barrysmith/Src/petsc-dev/arch-sieve/lib -lpetsc -L/usr/X11R6/lib > -lX11 -llapack -lblas -L/usr/lib/gcc/i686-apple-darwin10/4.2.1/x86_64 > -L/usr/lib/i686-apple-darwin10/4.2.1 > -L/usr/lib/gcc/i686-apple-darwin10/4.2.1 -ldl -lpmpich -lmpich -lopa -lmpl > -lpthread -lSystem -lmpichf90 -lgfortran > -L/usr/local/lib/gcc/x86_64-apple-darwin10.4.0/4.6.0 -L/usr/local/lib > -lgfortran -lgcc_ext.10.5 -lmpichcxx -lstdc++ -lmpichcxx -lstdc++ -ldl > -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -ldl > i686-apple-darwin10-g++-4.2.1: ex2.o: No such file or directory > make[1]: [ex2] Error 1 (ignored) > /bin/rm -f -f ex2.o > /usr/bin/diff: data/ex2_1.vtk: No such file or directory > /usr/bin/diff: testMesh.vtk: No such file or directory > Possible problem with ex2_1, diffs above > /usr/bin/diff: data/ex2_1.vtk: No such file or directory > /usr/bin/diff: testMesh.vtk: No such file or directory > Possible problem with ex2_1, diffs above > /usr/bin/diff: data/ex2_1.vtk: No such file or directory > /usr/bin/diff: testMesh.vtk: No such file or directory > Possible problem with ex2_1, diffs above > make: *** No rule to make target `ex10.PETSc', needed by > `testexamples_SIEVE'. Stop. > barry-smiths-macbook-pro:tutorials barrysmith$ > > -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20110525/e28eb5d9/attachment.html>
