reproduced with fortran enabled, additionally: /Users/aron/sandbox/petsc/arch-darwin-c-debug/bin/mpif90 -c -Wall -Wno-unused-variable -g -I/Users/aron/sandbox/petsc/include -I/Users/aron/sandbox/petsc/arch-darwin-c-debug/include -o ex5f.o ex5f.F Warning: Nonconforming tab character in column 1 of line 2757 Warning: Nonconforming tab character in column 1 of line 4937 Warning: Nonconforming tab character in column 1 of line 6914 Warning: Nonconforming tab character in column 1 of line 8887 Warning: Nonconforming tab character in column 1 of line 10901 /Users/aron/sandbox/petsc/arch-darwin-c-debug/bin/mpif90 -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wno-unused-variable -g -o ex5f ex5f.o -L/Users/aron/sandbox/petsc/arch-darwin-c-debug/lib -lpetsc -L/usr/X11R6/lib -lX11 -lpthread -llapack -lblas -L/usr/lib/gcc/i686-apple-darwin10/4.2.1/x86_64 -L/usr/lib/i686-apple-darwin10/4.2.1 -L/usr/lib/gcc/i686-apple-darwin10/4.2.1 -lmpichf90 -lgfortran -L/usr/local/Cellar/gfortran/4.2.4-5664/lib/gcc/i686-apple-darwin10/4.2.1/x86_64 -L/usr/local/Cellar/gfortran/4.2.4-5664/lib/gcc/i686-apple-darwin10/4.2.1 -L/usr/local/Cellar/gfortran/4.2.4-5664/lib/gcc -L/usr/local/Cellar/gfortran/4.2.4-5664/lib -ldl -lpmpich -lmpich -lopa -lmpl -lpthread -lSystem -ldl Undefined symbols: "_dmlocaltoglobalbegin_", referenced from: _forminitialguess_ in ex5f.o "_dmgetlocalvector_", referenced from: _forminitialguess_ in ex5f.o "_matassemblybegin_", referenced from: _formjacobianlocal_ in ex5f.o "_dmdestroy_", referenced from: _MAIN__ in ex5f.o "_snessolve_", referenced from: _MAIN__ in ex5f.o "_vecrestorearray_", referenced from: _forminitialguess_ in ex5f.o "_vecdestroy_", referenced from: _MAIN__ in ex5f.o _MAIN__ in ex5f.o "_matsetvalueslocal_", referenced from: _formjacobianlocal_ in ex5f.o _formjacobianlocal_ in ex5f.o "_matassemblyend_", referenced from: _formjacobianlocal_ in ex5f.o "_dmdagetcorners_", referenced from: _MAIN__ in ex5f.o "_dmdasetlocaljacobian_", referenced from: _MAIN__ in ex5f.o "_petscinitialize_", referenced from: _MAIN__ in ex5f.o "_dmcreateglobalvector_", referenced from: _MAIN__ in ex5f.o "_petscfinalize_", referenced from: _MAIN__ in ex5f.o "_snessetdm_", referenced from: _MAIN__ in ex5f.o "_snessetfromoptions_", referenced from: _MAIN__ in ex5f.o "_snescreate_", referenced from: _MAIN__ in ex5f.o "_snesdestroy_", referenced from: _MAIN__ in ex5f.o "_dmdacreate2d_", referenced from: _MAIN__ in ex5f.o "_vecduplicate_", referenced from: _MAIN__ in ex5f.o "_petsclogflops_", referenced from: _formfunctionlocal_ in ex5f.o "_dmdagetghostcorners_", referenced from: _MAIN__ in ex5f.o "_dmrestorelocalvector_", referenced from: _forminitialguess_ in ex5f.o "_snesgetiterationnumber_", referenced from: _MAIN__ in ex5f.o "_dmlocaltoglobalend_", referenced from: _forminitialguess_ in ex5f.o "_dmdasetlocalfunction_", referenced from: _MAIN__ in ex5f.o "_dmdagetinfo_", referenced from: _MAIN__ in ex5f.o "_petscoptionsgetreal_", referenced from: _MAIN__ in ex5f.o "_vecgetarray_", referenced from: _forminitialguess_ in ex5f.o ld: symbol(s) not found collect2: ld returned 1 exit status make[3]: [ex5f] Error 1 (ignored)
On Sun, Oct 7, 2012 at 7:29 PM, Satish Balay <petsc-maint at mcs.anl.gov>wrote: > Hm - nightlybuilds use --download-mpich=1 - but I don't see this error > on OSX build. > > wrt binsection - the following worked - the last time I tried. > > http://www.mcs.anl.gov/petsc/documentation/faq.html#bisect > > Satish > > On Sun, 7 Oct 2012, Aron Ahmadia wrote: > > > reproduced with --download-mpich=1 > > > > how the heck do you guys bisect with two independent repos? > > > > A > > > > On Sun, Oct 7, 2012 at 6:28 PM, Aron Ahmadia <aron at ahmadia.net> wrote: > > > > > I'm able to reproduce with shared libraries enabled and disabled. Your > > > nightly logs aren't indicating failures as far as I can tell. > > > > > > changeset: 24541:729963bc657c > > > tag: tip > > > user: Stefano Zampini <stefano.zampini at gmail.com> > > > date: Sat Oct 06 13:39:31 2012 +0200 > > > summary: Rearranged some deallocations when building FETIDP mat. > > > (same failure with 2 processes), I'm looking into whether any of the > > > specific configure options (python/shared libraries) triggers the > failure. > > > > > > ~/s/petsc ??? make PETSC_DIR=/Users/aron/sandbox/petsc > > > PETSC_ARCH=arch-darwin-c-debug test > > > Running test examples to verify correct installation > > > Using PETSC_DIR=/Users/aron/sandbox/petsc and > > > PETSC_ARCH=arch-darwin-c-debug > > > Possible error running C/C++ src/snes/examples/tutorials/ex19 with 1 > MPI > > > process > > > See http://www.mcs.anl.gov/petsc/documentation/faq.html > > > [peregrine:31992] *** Process received signal *** > > > [peregrine:31992] Signal: Segmentation fault (11) > > > [peregrine:31992] Signal code: Address not mapped (1) > > > [peregrine:31992] Failing at address: 0x440000b0 > > > [peregrine:31992] [ 0] 2 libSystem.B.dylib > > > 0x00007fff846391ba _sigtramp + 26 > > > [peregrine:31992] [ 1] 3 ??? > > > 0x0000000101434fd0 0x0 + 4316155856 > > > [peregrine:31992] [ 2] 4 libpetsc.dylib > > > 0x0000000100118456 PetscInitialize + 1424 > > > [peregrine:31992] [ 3] 5 ex19 > > > 0x000000010000110f main + 43 > > > [peregrine:31992] [ 4] 6 ex19 > > > 0x00000001000010dc start + 52 > > > [peregrine:31992] [ 5] 7 ??? > > > 0x0000000000000007 0x0 + 7 > > > [peregrine:31992] *** End of error message *** > > > mpiexec noticed that job rank 0 with PID 31992 on node peregrine.local > > > exited on signal 11 (Segmentation fault). > > > > > > > > -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.mcs.anl.gov/pipermail/petsc-dev/attachments/20121007/2df3e898/attachment-0001.html>