The first error is
nvcc error : 'cicc' died due to signal 9 (Kill signal)
nvcc error : 'cicc' died due to signal 9 (Kill signal)
later
/autofs/nccs-svm1_home1/adams/petsc/arch-summit-opt64-gnu-cuda/externalpackages/git.amgx/base/src/amgx_c_common.cu(77):
catastrophic error: error while writing generated C++ file: Cannot allocate
memory
1 catastrophic error detected in the compilation of
"/tmp/tmpxft_000038d3_00000000-4_amgx_c_common.cpp4.ii".
Whatever machine you are compiling on seems to be overloaded. What does top
show? Can you log into "different" compiler servers on Summit?
I run the install on the utk system with no problems like this.
PETSc configure is deciding
TEST configureMakeNP from
config.packages.make(/autofs/nccs-svm1_home1/adams/petsc/config/BuildSystem/config/packages/make.py:168)
TESTING: configureMakeNP from
config.packages.make(config/BuildSystem/config/packages/make.py:168)
check no of cores on the build machine [perhaps to do make '-j ncores']
module multiprocessing found 128 cores: using make_np = 59
Defined make macro "MAKE_NP" to "59"
Defined make macro "MAKE_TEST_NP" to "49"
Defined make macro "MAKE_LOAD" to "166.4"
Defined make macro "NPMAX" to "128"
then somehow this gets passed down to the AMGX cmake. Perhaps you could try
less greedy numbers.
Executing: /usr/bin/gmake -j59 -l166.4
Perhaps try
--with-make-np=20
--with-make-load=20
Barry
> On Dec 3, 2019, at 4:17 PM, Mark Adams <mfad...@lbl.gov> wrote:
>
> That might have been from an old .nsf file. Here is a new one. I'm sure I
> have the disk space.
>
> On Tue, Dec 3, 2019 at 4:51 PM Mark Adams <mfad...@lbl.gov> wrote:
> Humm, clean up and seem to have different error:
>
>
> On Tue, Dec 3, 2019 at 3:45 PM Matthew Knepley <knep...@gmail.com> wrote:
> Could you have run out of disk space?
>
> /usr/bin/ranlib: libamgx_base.a: Input/output error
> gmake[2]: *** [base/libamgx_base.a] Error 1
> gmake[2]: *** Deleting file `base/libamgx_base.a'
> gmake[1]: *** [base/CMakeFiles/amgx_base.dir/all] Error 2
> gmake: *** [all] Error 2
>
> Matt
>
> On Tue, Dec 3, 2019 at 1:44 PM Mark Adams <mfad...@lbl.gov> wrote:
>
>
>
> --
> What most experimenters take for granted before they begin their experiments
> is infinitely more interesting than any results to which their experiments
> lead.
> -- Norbert Wiener
>
> https://www.cse.buffalo.edu/~knepley/
> <configure.log>
