Pierre, This is an external package to petsc. Shall it be listed at https://www.mcs.anl.gov/petsc/miscellaneous/external.html? PETSc: External Software - anl.gov<https://www.mcs.anl.gov/petsc/miscellaneous/external.html> PETSc interfaces to the following optional external software (installing packages) (manual pages):. AMD - Approximate minimum degree orderings.; BLAS and LAPACK; Chaco - a graph partitioning package.; ESSL - IBM's math library for fast sparse direct LU factorization. FFTW - Fastest Fourier Transform in the West, developed at MIT by Matteo Frigo and Steven G. Johnson. www.mcs.anl.gov Hong ________________________________ From: Pierre Jolivet <pie...@joliv.et> Sent: Thursday, March 18, 2021 1:16 AM To: Zhang, Hong <hzh...@mcs.anl.gov> Cc: For users of the development version of PETSc <petsc-dev@mcs.anl.gov> Subject: Re: [petsc-dev] MatTransposeMatMult() bug
https://www.sciencedirect.com/science/article/abs/pii/S0898122121000055 https://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/KSP/KSPHPDDM.html https://www.mcs.anl.gov/petsc/petsc-current/docs/manualpages/PC/PCHPDDM.html I need to update the PETSc user manual though, specifically with respect to systems with multiple right-hand sides. But don’t worry, Stefano has sorted the bug out, which was due to a faulty MatSetFromOptions() in MatMAIJ, used by MatTransposeMatMult(). Thanks, Pierre On 17 Mar 2021, at 11:21 PM, Zhang, Hong <hzh...@mcs.anl.gov<mailto:hzh...@mcs.anl.gov>> wrote: What is hpddm? I do not see its document. Hong ________________________________ From: Matthew Knepley <knep...@gmail.com<mailto:knep...@gmail.com>> Sent: Wednesday, March 17, 2021 2:49 PM To: Zhang, Hong <hzh...@mcs.anl.gov<mailto:hzh...@mcs.anl.gov>> Cc: Pierre Jolivet <pie...@joliv.et<mailto:pie...@joliv.et>>; For users of the development version of PETSc <petsc-dev@mcs.anl.gov<mailto:petsc-dev@mcs.anl.gov>> Subject: Re: [petsc-dev] MatTransposeMatMult() bug On Wed, Mar 17, 2021 at 3:27 PM Zhang, Hong via petsc-dev <petsc-dev@mcs.anl.gov<mailto:petsc-dev@mcs.anl.gov>> wrote: Pierre, Do you mean a possible bug in C=AtB MatTransposeMatMult()? Can you provide a stand-alone test without hpddm that reproduces this error? Hong, you should be able to just configure with --download-hpddm and then run that ex76 test. Thanks, Matt Hong ________________________________ From: petsc-dev <petsc-dev-boun...@mcs.anl.gov<mailto:petsc-dev-boun...@mcs.anl.gov>> on behalf of Pierre Jolivet <pie...@joliv.et<mailto:pie...@joliv.et>> Sent: Wednesday, March 17, 2021 4:31 AM To: For users of the development version of PETSc <petsc-dev@mcs.anl.gov<mailto:petsc-dev@mcs.anl.gov>> Subject: [petsc-dev] MatTransposeMatMult() bug Hello, While trying out Stefano’s PCApplyMat_MG() code (*), we stumbled upon weird numerical errors when reusing a Mat for both MatProduct_AB and MatProduct_AtB. This reminded me that there has been a long-standing issue with MatTransposeMatMult(), see https://www.mcs.anl.gov/petsc/petsc-current/src/ksp/pc/impls/hpddm/hpddm.cxx.html#line608, that I never looked into. I’ve now been trying to figure this out, because this has side effects in multiple places (PCMG and PCHPDDM at least), and thus could impact user-code as well? With this commit: https://gitlab.com/petsc/petsc/-/commit/03d8bd538039defc2fcc3e37d523735c4aaceba0 + $ mpirun -n 4 src/ksp/ksp/tutorials/ex76 -ksp_converged_reason -pc_type hpddm -pc_hpddm_levels_1_eps_nev 20 -ksp_type preonly -mat_type aij -load_dir ${DATAFILESPATH}/matrices/hpddm/GENEO -rhs 2 -pc_hpddm_coarse_correction balanced -C_input_mattransposematmult -D_output_mattransposematmult I’m seeing that C is nonzero, but D is full of zeros. Mat Object: 4 MPI processes type: mpidense 5.7098316584361917e-08 1.0159399260517841e-07 1.5812349976211856e-07 2.0688121715350138e-07 2.4887556933361981e-08 4.8111092300772958e-08 1.4606298643602107e-07 1.7213611729839211e-07 […] Mat Object: 4 MPI processes type: mpidense 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00 […] If one switches to a MatType which has no MatProduct_AtB implementation with B of type MPIDense (reminder: in that case, the product is computed column-by-column), e.g., -mat_type sbaij, one gets the expected result. Mat Object: 4 MPI processes type: mpidense 7.2003197398135299e-01 9.5191869895699011e-01 6.1793966541680234e-02 9.3884397585488877e-01 1.0022337823233585e-02 2.4653068080134588e-01 1.4463931936094099e-01 8.6111517670701687e-01 Is there a bug somewhere with the MatAIJ implementation, or am I doing something which is not allowed by the MatProduct() machinery? Thanks, Pierre (*) https://gitlab.com/petsc/petsc/-/merge_requests/3717 -- What most experimenters take for granted before they begin their experiments is infinitely more interesting than any results to which their experiments lead. -- Norbert Wiener https://www.cse.buffalo.edu/~knepley/<http://www.cse.buffalo.edu/~knepley/>
