OK, it looks like this flag caused the problem and does not seem to be necessary:
'--LDFLAGS=-L'+os.environ['ROCM_PATH']+'/lib -lhsa-runtime64', On Tue, Jul 20, 2021 at 9:00 AM Mark Adams <mfad...@lbl.gov> wrote: > > > On Mon, Jul 19, 2021 at 6:41 PM Scott Kruger <kru...@txcorp.com> wrote: > >> >> Mark, >> >> On tulip, things with fortran went wonky when a `-fast` flag snuck into >> the flags (snuck in being me copying a previous configure file and not >> questioning the flags). The reason is that for clang, `-fast` implies >> link time optimization (lto) for C/C++ code, but flang doesn't support >> lto so things got weird. I suspect that gfortran does not either (but >> perhaps the real question is why not use flang?) >> > > It does work with GNU. I am doing this for an application and I want to > avoid dictating the program env. > > I'm (re)trying with -O0 just to check. > > >> >> I look at configure and I don't see anything in your flags that would >> trigger lto, but as Junchao says, it might be picking something up from >> Kokkos, so perhaps this is the issue. >> >> > The configure files that I sent did not have Kokkos. They were stripped > down. > > I have asked ORNL, but don't expect help. > The person (Matt) that is helping me for other things is very helpful so > perhaps he can come up with some ideas. > Otherwise I will tell the app that they need to use GNU for now. > > Thanks, > Mark > > > >> Scott >> >> >> On 2021-07-19 07:19, Mark Adams did write: >> > Thanks, but this happens w/o Kokkos. >> > I've stripped this down and attached good/bad logs without/with Fortran >> > bindings. >> > Hope this helps, >> > Thanks again, >> > Mark >> > >> > On Sun, Jul 18, 2021 at 12:00 PM Stefano Zampini < >> stefano.zamp...@gmail.com> >> > wrote: >> > >> > > This is probably kokkos pulling in the dependencies where compiling >> kokkos >> > > source within PETSc. >> > > >> > > Il Dom 18 Lug 2021, 16:29 Mark Adams <mfad...@lbl.gov> ha scritto: >> > > >> > >> Whoops, this error was just from not telling gfortran to allow long >> lines. >> > >> >> > >> Anway, I did find that the when fortran bindings are enabled this OMP >> > >> thing gets into the library. No idea how. I'll askm ORNL. >> > >> >> > >> 10:26 jczhang/fix-cray-mpicxx-includes/main= >> > >> /gpfs/alpine/csc314/scratch/adams/petsc2$ nm >> > >> >> /gpfs/alpine/csc314/scratch/adams/petsc2/arch-spock-opt-cray-kokkos/lib/libpetsc.so >> > >> |g offload >> > >> U .omp_offloading.img_cache.cray_amdgcn-amd-amdhsa >> > >> U .omp_offloading.img_size.cray_amdgcn-amd-amdhsa >> > >> U .omp_offloading.img_start.cray_amdgcn-amd-amdhsa >> > >> 0000000001d457b0 T vecgetoffloadmask_ >> > >> >> > >> >> > >> On Sun, Jul 18, 2021 at 8:43 AM Mark Adams <mfad...@lbl.gov> wrote: >> > >> >> > >>> Ah, your test was not on Spock ... I have something working but >> this is >> > >>> strange. >> > >>> >> > >>> I switched to the GNU ProgEnv. and it passed the Fortran test in >> > >>> 'check', but this failed: >> > >>> >> > >>> >> > >>> >> > >>> >> > >>> >> > >>> >> > >>> >> > >>> >> > >>> >> > >>> *08:26 2 jczhang/fix-cray-mpicxx-includes/main= >> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ make >> > >>> >> PETSC_DIR=/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu >> > >>> PETSC_ARCH="" ex40f90ftn -L/sw/spock/spack-envs/views/rocm-4.1.0/lib >> > >>> -lamdhip64 -lhsa-runtime64 -fPIC -g -O0 -fPIC -g -O0 >> > >>> >> -I/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu/include >> > >>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include ex40f90.F90 >> > >>> >> -Wl,-rpath,/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu/lib >> > >>> >> -L/gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-dbg-gnu/lib >> > >>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib >> > >>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib >> > >>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/gnu/9.1/lib >> > >>> -L/opt/cray/pe/mpich/8.1.4/ofi/gnu/9.1/lib >> > >>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib >> > >>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib >> > >>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/GNU/9.1/x86_64/lib >> > >>> <http://21.04.1.1/GNU/9.1/x86_64/lib> >> > >>> -L/opt/cray/pe/libsci/21.04.1.1/GNU/9.1/x86_64/lib >> > >>> <http://21.04.1.1/GNU/9.1/x86_64/lib> >> > >>> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib -L/opt/cray/pe/pmi/6.0.10/lib >> > >>> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib >> > >>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib >> > >>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 >> > >>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 >> > >>> -Wl,-rpath,/opt/gcc/10.2.0/snos/lib/gcc/x86_64-suse-linux/10.2.0 >> > >>> -L/opt/gcc/10.2.0/snos/lib/gcc/x86_64-suse-linux/10.2.0 >> > >>> -Wl,-rpath,/opt/gcc/10.2.0/snos/lib64 -L/opt/gcc/10.2.0/snos/lib64 >> > >>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/llvm/lib >> > >>> -L/sw/spock/spack-envs/views/rocm-4.1.0/llvm/lib >> > >>> -Wl,-rpath,/opt/gcc/10.2.0/snos/lib -L/opt/gcc/10.2.0/snos/lib >> -lpetsc >> > >>> -lhipsparse -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 >> > >>> -lhsa-runtime64 -lstdc++ -ldl -lpmi -lmpi_gtl_hsa -lxpmem >> -lgfortran -lm >> > >>> -lsci_gnu_82_mpi -lsci_gnu_82 -lmpifort_gnu_91 -lmpi_gnu_91 -ldsmml >> > >>> -lgfortran -lquadmath -lpthread -lm -lgcc_s -lquadmath -lstdc++ >> -ldl -o >> > >>> ex40f90ex40f90.F90:35:132: 35 | call >> > >>> >> DMDACreate2d(PETSC_COMM_WORLD,DM_BOUNDARY_NONE,DM_BOUNDARY_NONE,DMDA_STENCIL_BOX,ten,ten,PETSC_DECIDE,PETSC_DECIDE,two,one, >> > >>> & | >> > >>> >> 1Error: >> > >>> Line truncated at (1) [-Werror=line-truncation]ex40f90.F90:35:132:* >> > >>> * ....* >> > >>> >> > >>> But ex5f (the Fortran check test) does work manually also (sanity >> check). >> > >>> >> > >>> Oddly I seem to have the cray compilers: >> > >>> >> > >>> 08:34 jczhang/fix-cray-mpicxx-includes/main= >> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ which >> ftn >> > >>> /opt/cray/pe/craype/2.7.6/bin/ftn >> > >>> >> > >>> yet it is GNU: >> > >>> >> > >>> 08:34 jczhang/fix-cray-mpicxx-includes/main= >> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ ftn >> --version >> > >>> GNU Fortran (GCC) 10.2.0 20200723 (Cray Inc.) >> > >>> Copyright (C) 2020 Free Software Foundation, Inc. >> > >>> This is free software; see the source for copying conditions. >> There is >> > >>> NO >> > >>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR >> > >>> PURPOSE. >> > >>> >> > >>> The documentation says ftn should be here: >> > >>> >> > >>> 08:34 jczhang/fix-cray-mpicxx-includes/main= >> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ >> > >>> $GCC_PATH/bin/gfortran --version >> > >>> GNU Fortran (GCC) 10.2.0 20200723 (Cray Inc.) >> > >>> Copyright (C) 2020 Free Software Foundation, Inc. >> > >>> This is free software; see the source for copying conditions. >> There is >> > >>> NO >> > >>> warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR >> > >>> PURPOSE. >> > >>> >> > >>> Same, but the path is not the same: >> > >>> >> > >>> 08:39 jczhang/fix-cray-mpicxx-includes/main= >> > >>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ echo >> $GCC_PATH >> > >>> /opt/gcc/10.2.0 >> > >>> >> > >>> Anyway, thanks for your help, >> > >>> Mark >> > >>> >> > >>> On Sat, Jul 17, 2021 at 11:26 PM Junchao Zhang < >> junchao.zh...@gmail.com> >> > >>> wrote: >> > >>> >> > >>>> Mark, I can reproduce this error with PrgEnv-cray, i.e., using the >> > >>>> Cray compiler (clang-11). Previously I used PrgEnv-gnu, which did >> not have >> > >>>> this error. >> > >>>> Probably it is a problem of Spock. But I am not sure. >> > >>>> >> > >>>> --Junchao Zhang >> > >>>> >> > >>>> >> > >>>> On Sat, Jul 17, 2021 at 10:17 AM Mark Adams <mfad...@lbl.gov> >> wrote: >> > >>>> >> > >>>>> And I can run a fortran test, with warnings, but C tests fail: >> > >>>>> >> > >>>>> 11:15 jczhang/fix-cray-mpicxx-includes/main= >> > >>>>> /gpfs/alpine/csc314/scratch/adams/petsc$ make >> > >>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc >> > >>>>> PETSC_ARCH=arch-spock-opt-cray-kokkos -f gmakefile test >> > >>>>> search='ts_utils_dmplexlandau_tutorials-ex1f90_0' >> > >>>>> Using MAKEFLAGS: -- >> search=ts_utils_dmplexlandau_tutorials-ex1f90_0 >> > >>>>> PETSC_ARCH=arch-spock-opt-cray-kokkos >> > >>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc >> > >>>>> FC >> > >>>>> >> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90.o >> > >>>>> FLINKER >> > >>>>> >> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90 >> > >>>>> >> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: >> > >>>>> warning: alignment 128 of symbol >> > >>>>> `$host_init$$runtime_init_for_iso_c_binding$iso_c_binding_' in >> > >>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller >> than 256 in >> > >>>>> >> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90.o >> > >>>>> >> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: >> > >>>>> warning: alignment 64 of symbol `$data_init$iso_c_binding_' in >> > >>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller >> than 256 in >> > >>>>> >> arch-spock-opt-cray-kokkos/tests/ts/utils/dmplexlandau/tutorials/ex1f90.o >> > >>>>> TEST >> > >>>>> >> arch-spock-opt-cray-kokkos/tests/counts/ts_utils_dmplexlandau_tutorials-ex1f90_0.counts >> > >>>>> ok ts_utils_dmplexlandau_tutorials-ex1f90_0 >> > >>>>> ok diff-ts_utils_dmplexlandau_tutorials-ex1f90_0 >> > >>>>> >> > >>>>> >> > >>>>> On Sat, Jul 17, 2021 at 10:53 AM Mark Adams <mfad...@lbl.gov> >> wrote: >> > >>>>> >> > >>>>>> HUmm, I can not reproduce this. >> > >>>>>> >> > >>>>>> 10:49 jczhang/fix-cray-mpicxx-includes/main= >> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc$ make >> > >>>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc >> > >>>>>> PETSC_ARCH=arch-spock-dbg-kokkos check >> > >>>>>> Running check examples to verify correct installation >> > >>>>>> Using PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc and >> > >>>>>> PETSC_ARCH=arch-spock-dbg-kokkos >> > >>>>>> gmake[3]: >> > >>>>>> >> [/gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/conf/rules:301: >> > >>>>>> ex19.PETSc] Error 2 (ignored) >> > >>>>>> *******************Error detected during compile or >> > >>>>>> link!******************* >> > >>>>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html >> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex19 >> > >>>>>> >> > >>>>>> >> ********************************************************************************* >> > >>>>>> cc -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lamdhip64 >> > >>>>>> -lhsa-runtime64 -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing >> > >>>>>> -Wno-unknown-pragmas -fstack-protector -Qunused-arguments >> > >>>>>> -fvisibility=hidden -g -O0 -fPIC -Wall -Wwrite-strings >> > >>>>>> -Wno-strict-aliasing -Wno-unknown-pragmas -fstack-protector >> > >>>>>> -Qunused-arguments -fvisibility=hidden -g -O0 >> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include >> > >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/include >> > >>>>>> >> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/include >> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include >> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include ex19.c >> > >>>>>> >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib >> > >>>>>> >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib >> > >>>>>> >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib >> > >>>>>> >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib >> > >>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib >> > >>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib >> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64 >> > >>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib >> > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib >> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib >> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib >> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib >> > >>>>>> -L/opt/cray/pe/pmi/6.0.10/lib >> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib >> > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib >> > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib >> > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib >> > >>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 >> > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 >> > >>>>>> >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux >> > >>>>>> >> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux >> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 >> > >>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 >> > >>>>>> >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib >> > >>>>>> >> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib >> > >>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore >> -lhipsparse >> > >>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 >> -lhsa-runtime64 >> > >>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray >> -lmpi_cray >> > >>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath >> -lcrayacc_amdgpu >> > >>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran >> -lpthread >> > >>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64 >> > >>>>>> -lquadmath -lstdc++ -ldl -o ex19 >> > >>>>>> ld.lld: error: >> > >>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so: >> > >>>>>> undefined reference to >> .omp_offloading.img_start.cray_amdgcn-amd-amdhsa >> > >>>>>> [--no-allow-shlib-undefined] >> > >>>>>> ld.lld: error: >> > >>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so: >> > >>>>>> undefined reference to >> .omp_offloading.img_size.cray_amdgcn-amd-amdhsa >> > >>>>>> [--no-allow-shlib-undefined] >> > >>>>>> ld.lld: error: >> > >>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so: >> > >>>>>> undefined reference to >> .omp_offloading.img_cache.cray_amdgcn-amd-amdhsa >> > >>>>>> [--no-allow-shlib-undefined] >> > >>>>>> clang-11: error: linker command failed with exit code 1 (use -v >> to >> > >>>>>> see invocation) >> > >>>>>> gmake[4]: *** [<builtin>: ex19] Error 1 >> > >>>>>> gmake[3]: >> > >>>>>> >> [/gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/conf/rules:301: >> > >>>>>> ex3k.PETSc] Error 2 (ignored) >> > >>>>>> *******************Error detected during compile or >> > >>>>>> link!******************* >> > >>>>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html >> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex3k >> > >>>>>> >> > >>>>>> >> ********************************************************************************* >> > >>>>>> hipcc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing >> > >>>>>> -Wno-unknown-pragmas -fvisibility=hidden -g -O0 -std=c++14 >> > >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/include >> > >>>>>> >> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/include >> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include >> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include >> -I/opt/cray/pe/libsci/ >> > >>>>>> 21.04.1.1/CRAY/9.0/x86_64/include >> > >>>>>> -I/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/include >> > >>>>>> -I/opt/cray/pe/pmi/6.0.10/include >> -I/opt/cray/pe/dsmml/0.1.4/dsmml//include >> > >>>>>> -I/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/include >> > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib -L/opt/cray/pe/pmi/6.0.10/lib >> > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml//lib >> > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib/pkgconfig/../ >> > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 >> > >>>>>> -Wl,--as-needed,-lsci_cray_mpi,--no-as-needed >> > >>>>>> -Wl,--as-needed,-lsci_cray,--no-as-needed >> > >>>>>> -Wl,--as-needed,-lmpi_cray,--no-as-needed >> > >>>>>> -Wl,--as-needed,-ldsmml,--no-as-needed >> > >>>>>> -Wl,--as-needed,-lpgas-shmem,--no-as-needed -lpmi -ldl >> -lmpi_gtl_hsa >> > >>>>>> -lxpmem -lquadmath -lmodules -lfi -lcraymath -lf -lu -lcsup >> > >>>>>> ex3k.kokkos.cxx >> > >>>>>> >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib >> > >>>>>> >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib >> > >>>>>> >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib >> > >>>>>> >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib >> > >>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib >> > >>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib >> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64 >> > >>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib >> > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib >> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib >> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib >> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib >> > >>>>>> -L/opt/cray/pe/pmi/6.0.10/lib >> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib >> > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib >> > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib >> > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib >> > >>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 >> > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 >> > >>>>>> >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux >> > >>>>>> >> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux >> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 >> > >>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 >> > >>>>>> >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib >> > >>>>>> >> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib >> > >>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore >> -lhipsparse >> > >>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 >> -lhsa-runtime64 >> > >>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray >> -lmpi_cray >> > >>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath >> -lcrayacc_amdgpu >> > >>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran >> -lpthread >> > >>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64 >> > >>>>>> -lquadmath -lstdc++ -ldl -o ex3k >> > >>>>>> >> /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: >> > >>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so: >> > >>>>>> undefined reference to >> `.omp_offloading.img_size.cray_amdgcn-amd-amdhsa' >> > >>>>>> >> /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: >> > >>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so: >> > >>>>>> undefined reference to >> `.omp_offloading.img_start.cray_amdgcn-amd-amdhsa' >> > >>>>>> >> /usr/lib64/gcc/x86_64-suse-linux/7/../../../../x86_64-suse-linux/bin/ld: >> > >>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib/libpetsc.so: >> > >>>>>> undefined reference to >> `.omp_offloading.img_cache.cray_amdgcn-amd-amdhsa' >> > >>>>>> clang-12: error: linker command failed with exit code 1 (use -v >> to >> > >>>>>> see invocation) >> > >>>>>> gmake[4]: *** >> > >>>>>> [/gpfs/alpine/csc314/scratch/adams/petsc/lib/petsc/conf/test:26: >> ex3k] >> > >>>>>> Error 1 >> > >>>>>> gmake[3]: [makefile:102: runex3k_kokkos] Error 2 (ignored) >> > >>>>>> 1,25c1,4 >> > >>>>>> < atol=1e-50, rtol=1e-08, stol=1e-08, maxit=50, maxf=10000 >> > >>>>>> < Vec Object: Exact Solution 2 MPI processes >> > >>>>>> < type: mpikokkos >> > >>>>>> < Process [0] >> > >>>>>> < 0. >> > >>>>>> < 0.015625 >> > >>>>>> < 0.125 >> > >>>>>> < Process [1] >> > >>>>>> < 0.421875 >> > >>>>>> < 1. >> > >>>>>> < Vec Object: Forcing function 2 MPI processes >> > >>>>>> < type: mpikokkos >> > >>>>>> < Process [0] >> > >>>>>> < 1e-72 >> > >>>>>> < 1.50024 >> > >>>>>> < 3.01563 >> > >>>>>> < Process [1] >> > >>>>>> < 4.67798 >> > >>>>>> < 7. >> > >>>>>> < 0 SNES Function norm 5.414682427127e+00 >> > >>>>>> < 1 SNES Function norm 2.952582418265e-01 >> > >>>>>> < 2 SNES Function norm 4.502293658739e-04 >> > >>>>>> < 3 SNES Function norm 1.389665806646e-09 >> > >>>>>> < Number of SNES iterations = 3 >> > >>>>>> < Norm of error 1.49752e-10 Iterations 3 >> > >>>>>> --- >> > >>>>>> > slurmstepd: error: execve(): >> > >>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials/./ex3k: No such >> > >>>>>> file or directory >> > >>>>>> > slurmstepd: error: execve(): >> > >>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials/./ex3k: No such >> > >>>>>> file or directory >> > >>>>>> > srun: error: spock01: tasks 0-1: Exited with exit code 2 >> > >>>>>> > srun: launch/slurm: _step_signal: Terminating StepId=272979.0 >> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials >> > >>>>>> Possible problem with ex3k running with kokkos-kernels, diffs >> above >> > >>>>>> ========================================= >> > >>>>>> *******************Error detected during compile or >> > >>>>>> link!******************* >> > >>>>>> See http://www.mcs.anl.gov/petsc/documentation/faq.html >> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials ex5f >> > >>>>>> ********************************************************* >> > >>>>>> ftn -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lamdhip64 >> > >>>>>> -lhsa-runtime64 -fPIC -g -O0 -fPIC -g -O0 >> > >>>>>> -I/gpfs/alpine/csc314/scratch/adams/petsc/include >> > >>>>>> >> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/include >> > >>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include ex5f.F90 >> > >>>>>> >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib >> > >>>>>> >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib >> > >>>>>> >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib >> > >>>>>> >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-dbg-kokkos/lib >> > >>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib >> > >>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib >> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 -L/opt/gcc/8.1.0/snos/lib64 >> > >>>>>> -Wl,-rpath,/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib >> > >>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib >> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib >> > >>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib >> > >>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib >> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib >> > >>>>>> -L/opt/cray/pe/pmi/6.0.10/lib >> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib >> > >>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib >> > >>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib >> > >>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib >> > >>>>>> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 >> > >>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 >> > >>>>>> >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux >> > >>>>>> >> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux >> > >>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 >> > >>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 >> > >>>>>> >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib >> > >>>>>> >> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib >> > >>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore >> -lhipsparse >> > >>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 >> -lhsa-runtime64 >> > >>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray -lmpifort_cray >> -lmpi_cray >> > >>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath >> -lcrayacc_amdgpu >> > >>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup -lgfortran >> -lpthread >> > >>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 -lclang_rt.builtins-x86_64 >> > >>>>>> -lquadmath -lstdc++ -ldl -o ex5f >> > >>>>>> >> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: >> > >>>>>> warning: alignment 128 of symbol >> > >>>>>> `$host_init$$runtime_init_for_iso_c_binding$iso_c_binding_' in >> > >>>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller >> than 256 in >> > >>>>>> /tmp/pe_30429/ex5f_1.o >> > >>>>>> >> /opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/bin/ld: >> > >>>>>> warning: alignment 64 of symbol `$data_init$iso_c_binding_' in >> > >>>>>> /opt/cray/pe/cce/11.0.4/cce/x86_64/lib/libmodules.so is smaller >> than 256 in >> > >>>>>> /tmp/pe_30429/ex5f_1.o >> > >>>>>> Fortran example src/snes/tutorials/ex5f run successfully with 1 >> MPI >> > >>>>>> process >> > >>>>>> Completed test examples >> > >>>>>> 10:49 jczhang/fix-cray-mpicxx-includes/main= >> > >>>>>> /gpfs/alpine/csc314/scratch/adams/petsc$ ll >> > >>>>>> >> > >>>>>> On Fri, Jul 16, 2021 at 11:28 PM Junchao Zhang < >> > >>>>>> junchao.zh...@gmail.com> wrote: >> > >>>>>> >> > >>>>>>> Mark, I configured with Fortran binding enabled with main + MR >> !4175 >> > >>>>>>> <https://gitlab.com/petsc/petsc/-/merge_requests/4175> >> > >>>>>>> >> > >>>>>>> '--with-mpiexec=srun', >> > >>>>>>> '--with-shared-libraries=1', >> > >>>>>>> '--with-cc=cc', >> > >>>>>>> '--with-cxx=CC', >> > >>>>>>> '--with-fc=ftn', >> > >>>>>>> '--with-fortran-bindings', >> > >>>>>>> '--with-hip', >> > >>>>>>> '--with-hipc=hipcc', >> > >>>>>>> '--with-debugging', >> > >>>>>>> '--CPPFLAGS=-I${ROCM_PATH}/include', >> > >>>>>>> '--CXXPPFLAGS=-I${ROCM_PATH}/include', >> > >>>>>>> '--CC_LINKER_FLAGS=-L${ROCM_PATH}/lib -lamdhip64 >> -lhsa-runtime64', >> > >>>>>>> '--CXX_LINKER_FLAGS=-L${ROCM_PATH}/lib -lamdhip64 >> -lhsa-runtime64', >> > >>>>>>> '--FC_LINKER_FLAGS=-L${ROCM_PATH}/lib -lamdhip64 >> -lhsa-runtime64', >> > >>>>>>> '--COPTFLAGS=-g -O0', >> > >>>>>>> '--CXXOPTFLAGS=-g -O0', >> > >>>>>>> '--FOPTFLAGS=-g -O0', >> > >>>>>>> '--download-kokkos', >> > >>>>>>> '--download-kokkos-kernels', >> > >>>>>>> '--download-kokkos-commit=3.4.01', >> > >>>>>>> '--download-kokkos-kernels-commit=3.4.01', >> > >>>>>>> '--with-kokkos-hip-arch=VEGA908', >> > >>>>>>> >> > >>>>>>> and 'make check' ran smoothly on a compute node >> > >>>>>>> >> > >>>>>>> $ make check >> > >>>>>>> Running check examples to verify correct installation >> > >>>>>>> Using PETSC_DIR=/ccs/home/jczhang/petsc and >> > >>>>>>> PETSC_ARCH=arch-spock-cray-kokkos-dbg >> > >>>>>>> C/C++ example src/snes/tutorials/ex19 run successfully with 1 >> MPI >> > >>>>>>> process >> > >>>>>>> C/C++ example src/snes/tutorials/ex19 run successfully with 2 >> MPI >> > >>>>>>> processes >> > >>>>>>> C/C++ example src/snes/tutorials/ex3k run successfully with >> > >>>>>>> kokkos-kernels >> > >>>>>>> Fortran example src/snes/tutorials/ex5f run successfully with 1 >> MPI >> > >>>>>>> process >> > >>>>>>> >> > >>>>>>> Completed test examples >> > >>>>>>> >> > >>>>>>> >> > >>>>>>> --Junchao Zhang >> > >>>>>>> >> > >>>>>>> >> > >>>>>>> On Fri, Jul 16, 2021 at 6:04 PM Mark Adams <mfad...@lbl.gov> >> wrote: >> > >>>>>>> >> > >>>>>>>> And I find that this error, on non-Kokkos C tests, is fixed by >> > >>>>>>>> turning the fortran bindings off: >> > >>>>>>>> >> > >>>>>>>> ld.lld: error: >> > >>>>>>>> >> /gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib/libpetsc.so: >> > >>>>>>>> undefined reference to >> .omp_offloading.img_start.cray_amdgcn-amd-amdhsa >> > >>>>>>>> [--no-allow-shlib-undefined] >> > >>>>>>>> ld.lld: error: >> > >>>>>>>> >> /gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib/libpetsc.so: >> > >>>>>>>> undefined reference to >> .omp_offloading.img_size.cray_amdgcn-amd-amdhsa >> > >>>>>>>> [--no-allow-shlib-undefined] >> > >>>>>>>> ld.lld: error: >> > >>>>>>>> >> /gpfs/alpine/phy122/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib/libpetsc.so: >> > >>>>>>>> undefined reference to >> .omp_offloading.img_cache.cray_amdgcn-amd-amdhsa >> > >>>>>>>> [--no-allow-shlib-undefined] >> > >>>>>>>> >> > >>>>>>>> On Fri, Jul 16, 2021 at 3:53 PM Mark Adams <mfad...@lbl.gov> >> wrote: >> > >>>>>>>> >> > >>>>>>>>> Not complex. THis has some overlap with my problem w/o Kokkos. >> > >>>>>>>>> >> > >>>>>>>>> On Fri, Jul 16, 2021 at 12:54 PM Junchao Zhang < >> > >>>>>>>>> junchao.zh...@gmail.com> wrote: >> > >>>>>>>>> >> > >>>>>>>>>> Do you use complex? post your configure.log. >> > >>>>>>>>>> >> > >>>>>>>>>> --Junchao Zhang >> > >>>>>>>>>> >> > >>>>>>>>>> >> > >>>>>>>>>> On Fri, Jul 16, 2021 at 9:47 AM Mark Adams <mfad...@lbl.gov> >> > >>>>>>>>>> wrote: >> > >>>>>>>>>> >> > >>>>>>>>>>> The simple Kokkos example is failing for me on Spock. >> > >>>>>>>>>>> Any ideas? >> > >>>>>>>>>>> Thanks, >> > >>>>>>>>>>> >> > >>>>>>>>>>> 10:44 main *= >> > >>>>>>>>>>> /gpfs/alpine/csc314/scratch/adams/petsc/src/snes/tutorials$ >> make >> > >>>>>>>>>>> PETSC_DIR=/gpfs/alpine/csc314/scratch/adams/petsc >> > >>>>>>>>>>> PETSC_ARCH=arch-spock-opt-cray-kokkos ex3k >> > >>>>>>>>>>> MPICH_CXX="hipcc" OMPI_CXX="hipcc" CC >> > >>>>>>>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lhsa-runtime64 >> > >>>>>>>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib -lamdhip64 >> -lhsa-runtime64 >> > >>>>>>>>>>> -Wall -Wwrite-strings -Wno-strict-aliasing >> -Wno-unknown-pragmas >> > >>>>>>>>>>> -fstack-protector -fvisibility=hidden -g -O2 -fPIC -Wall >> -Wwrite-strings >> > >>>>>>>>>>> -Wno-strict-aliasing -Wno-unknown-pragmas >> -fvisibility=hidden -g -O3 >> > >>>>>>>>>>> -std=c++14 >> -I/gpfs/alpine/csc314/scratch/adams/petsc/include >> > >>>>>>>>>>> >> -I/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/include >> > >>>>>>>>>>> >> -I/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include >> > >>>>>>>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include >> > >>>>>>>>>>> -I/sw/spock/spack-envs/views/rocm-4.1.0/include >> ex3k.kokkos.cxx >> > >>>>>>>>>>> >> -Wl,-rpath,/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/lib >> > >>>>>>>>>>> >> -L/gpfs/alpine/csc314/scratch/adams/petsc/arch-spock-opt-cray-kokkos/lib >> > >>>>>>>>>>> >> -Wl,-rpath,/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib >> > >>>>>>>>>>> >> -L/gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/lib >> > >>>>>>>>>>> -Wl,-rpath,/sw/spock/spack-envs/views/rocm-4.1.0/lib >> > >>>>>>>>>>> -L/sw/spock/spack-envs/views/rocm-4.1.0/lib >> > >>>>>>>>>>> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib64 >> -L/opt/gcc/8.1.0/snos/lib64 >> > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/libsci/ >> 21.04.1.1/CRAY/9.0/x86_64/lib >> > >>>>>>>>>>> -L/opt/cray/pe/libsci/21.04.1.1/CRAY/9.0/x86_64/lib >> > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib >> > >>>>>>>>>>> -L/opt/cray/pe/mpich/8.1.4/ofi/cray/9.1/lib >> > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/mpich/8.1.4/gtl/lib >> > >>>>>>>>>>> -L/opt/cray/pe/mpich/8.1.4/gtl/lib >> -Wl,-rpath,/opt/cray/pe/pmi/6.0.10/lib >> > >>>>>>>>>>> -L/opt/cray/pe/pmi/6.0.10/lib >> -Wl,-rpath,/opt/cray/pe/dsmml/0.1.4/dsmml/lib >> > >>>>>>>>>>> -L/opt/cray/pe/dsmml/0.1.4/dsmml/lib >> > >>>>>>>>>>> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce/x86_64/lib >> > >>>>>>>>>>> -L/opt/cray/pe/cce/11.0.4/cce/x86_64/lib >> > >>>>>>>>>>> >> -Wl,-rpath,/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 >> > >>>>>>>>>>> -L/opt/cray/xpmem/2.2.40-2.1_2.7__g3cf3325.shasta/lib64 >> > >>>>>>>>>>> >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux >> > >>>>>>>>>>> >> -L/opt/cray/pe/cce/11.0.4/cce-clang/x86_64/lib/clang/11.0.0/lib/linux >> > >>>>>>>>>>> >> -Wl,-rpath,/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 >> > >>>>>>>>>>> -L/opt/gcc/8.1.0/snos/lib/gcc/x86_64-suse-linux/8.1.0 >> > >>>>>>>>>>> >> -Wl,-rpath,/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib >> > >>>>>>>>>>> >> -L/opt/cray/pe/cce/11.0.4/binutils/x86_64/x86_64-pc-linux-gnu/..//x86_64-unknown-linux-gnu/lib >> > >>>>>>>>>>> -lpetsc -lkokkoskernels -lkokkoscontainers -lkokkoscore >> -lhipsparse >> > >>>>>>>>>>> -lhipblas -lrocsparse -lrocsolver -lrocblas -lamdhip64 >> -lhsa-runtime64 >> > >>>>>>>>>>> -lstdc++ -ldl -lpmi -lsci_cray_mpi -lsci_cray >> -lmpifort_cray -lmpi_cray >> > >>>>>>>>>>> -lmpi_gtl_hsa -lxpmem -ldsmml -lpgas-shmem -lquadmath >> -lcrayacc_amdgpu >> > >>>>>>>>>>> -lopenacc -lmodules -lfi -lcraymath -lf -lu -lcsup >> -lgfortran -lpthread >> > >>>>>>>>>>> -lgcc_eh -lm -lclang_rt.craypgo-x86_64 >> -lclang_rt.builtins-x86_64 >> > >>>>>>>>>>> -lquadmath -lstdc++ -ldl -o ex3k >> > >>>>>>>>>>> In file included from ex3k.kokkos.cxx:3: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscdmda_kokkos.hpp:4: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec_kokkos.hpp:14: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec.h:9: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsys.h:42: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsystypes.h:255: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Complex.hpp:47: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Atomic.hpp:212: >> > >>>>>>>>>>> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Atomic_Exchange.hpp:259:11: >> > >>>>>>>>>>> error: no member named 'lock_address_host_space' in >> namespace >> > >>>>>>>>>>> 'Kokkos::Impl::Kokkos::Impl'; did you mean simply >> 'lock_address_host_space'? >> > >>>>>>>>>>> while (!Impl::lock_address_host_space((void*)dest)) >> > >>>>>>>>>>> ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ >> > >>>>>>>>>>> lock_address_host_space >> > >>>>>>>>>>> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_HostSpace.hpp:83:6: >> > >>>>>>>>>>> note: 'lock_address_host_space' declared here >> > >>>>>>>>>>> bool lock_address_host_space(void* ptr); >> > >>>>>>>>>>> ^ >> > >>>>>>>>>>> In file included from ex3k.kokkos.cxx:3: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscdmda_kokkos.hpp:4: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec_kokkos.hpp:14: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec.h:9: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsys.h:42: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsystypes.h:255: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Complex.hpp:47: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Atomic.hpp:212: >> > >>>>>>>>>>> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Atomic_Exchange.hpp:261:3: >> > >>>>>>>>>>> error: no member named 'memory_fence' in namespace >> 'Kokkos::Impl::Kokkos'; >> > >>>>>>>>>>> did you mean simply 'memory_fence'? >> > >>>>>>>>>>> Kokkos::memory_fence(); >> > >>>>>>>>>>> ^~~~~~~~~~~~~~~~~~~~ >> > >>>>>>>>>>> memory_fence >> > >>>>>>>>>>> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Memory_Fence.hpp:53:6: >> > >>>>>>>>>>> note: 'memory_fence' declared here >> > >>>>>>>>>>> void memory_fence() { >> > >>>>>>>>>>> ^ >> > >>>>>>>>>>> In file included from ex3k.kokkos.cxx:3: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscdmda_kokkos.hpp:4: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec_kokkos.hpp:14: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscvec.h:9: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsys.h:42: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/csc314/scratch/adams/petsc/include/petscsystypes.h:255: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Complex.hpp:47: >> > >>>>>>>>>>> In file included from >> > >>>>>>>>>>> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/Kokkos_Atomic.hpp:212: >> > >>>>>>>>>>> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Atomic_Exchange.hpp:277:3: >> > >>>>>>>>>>> error: no member named 'memory_fence' in namespace >> 'Kokkos::Impl::Kokkos'; >> > >>>>>>>>>>> did you mean simply 'memory_fence'? >> > >>>>>>>>>>> Kokkos::memory_fence(); >> > >>>>>>>>>>> ^~~~~~~~~~~~~~~~~~~~ >> > >>>>>>>>>>> memory_fence >> > >>>>>>>>>>> >> /gpfs/alpine/geo127/proj-shared/spock/petsc/current/arch-opt-cray-kokkos/include/impl/Kokkos_Memory_Fence.hpp:53:6: >> > >>>>>>>>>>> note: 'memory_fence' declared here >> > >>>>>>>>>>> void memory_fence() { >> > >>>>>>>>>>> ^ >> > >>>>>>>>>>> >> > >>>>>>>>>> >> >> >> >> >> -- >> Scott Kruger >> Tech-X Corporation kru...@txcorp.com >> 5621 Arapahoe Ave, Suite A Phone: (720) 466-3196 >> Boulder, CO 80303 Fax: (303) 448-7756 >> >