Could you please forward configure.log to petsc-ma...@mcs.anl.gov <mailto:petsc-ma...@mcs.anl.gov>? It’ll help the SF people figure out if it’s a false positive or if something needs fixing.
Thanks, Pierre > On 12 Sep 2021, at 7:33 PM, Antonio T. sagitter <sagit...@fedoraproject.org> > wrote: > > On 9/12/21 19:29, Pierre Jolivet wrote: >> In your configure.log, I see --with-mpi=0, so I’m surprised this is even >> running, and even more surprised that you are encountering OpenMPI errors. >> Is this from a different build? > > Yes, sorry. This is another build with MPI. > >> Thanks, >> Pierre >>> On 12 Sep 2021, at 7:18 PM, Antonio T. sagitter >>> <sagit...@fedoraproject.org> wrote: >>> >>> Okay. I will try to set correctly the DATAFILESPATH options. >>> >>> I see even this error: >>> >>> not ok >>> vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create # >>> Error code: 68 >>> >>> # PetscSF Object: 4 MPI processes >>> >>> # type: window >>> >>> # [0] Number of roots=3, leaves=2, remote ranks=2 >>> >>> # [0] 0 <- (3,1) >>> >>> # [0] 1 <- (1,0) >>> >>> # [1] Number of roots=2, leaves=3, remote ranks=2 >>> >>> # [1] 0 <- (0,1) >>> >>> # [1] 1 <- (2,0) >>> >>> # [1] 2 <- (0,2) >>> >>> # [2] Number of roots=2, leaves=3, remote ranks=3 >>> >>> # [2] 0 <- (1,1) >>> >>> # [2] 1 <- (3,0) >>> >>> # [2] 2 <- (0,2) >>> >>> # [3] Number of roots=2, leaves=3, remote ranks=2 >>> >>> # [3] 0 <- (2,1) >>> >>> # [3] 1 <- (0,0) >>> >>> # [3] 2 <- (0,2) >>> >>> # [0] Roots referenced by my leaves, by rank >>> >>> # [0] 1: 1 edges >>> >>> # [0] 1 <- 0 >>> >>> # [0] 3: 1 edges >>> >>> # [0] 0 <- 1 >>> >>> # [1] Roots referenced by my leaves, by rank >>> >>> # [1] 0: 2 edges >>> >>> # [1] 0 <- 1 >>> >>> # [1] 2 <- 2 >>> >>> # [1] 2: 1 edges >>> >>> # [1] 1 <- 0 >>> >>> # [2] Roots referenced by my leaves, by rank >>> >>> # [2] 0: 1 edges >>> >>> # [2] 2 <- 2 >>> >>> # [2] 1: 1 edges >>> >>> # [2] 0 <- 1 >>> >>> # [2] 3: 1 edges >>> >>> # [2] 1 <- 0 >>> >>> # [3] Roots referenced by my leaves, by rank >>> >>> # [3] 0: 2 edges >>> >>> # [3] 1 <- 0 >>> >>> # [3] 2 <- 2 >>> >>> # [3] 2: 1 edges >>> >>> # [3] 0 <- 1 >>> >>> # current flavor=CREATE synchronization=FENCE MultiSF sort=rank-order >>> >>> # current info=MPI_INFO_NULL >>> >>> # [buildhw-x86-09:1135574] *** An error occurred in MPI_Accumulate >>> >>> # [buildhw-x86-09:1135574] *** reported by process [3562602497,3] >>> >>> # [buildhw-x86-09:1135574] *** on win rdma window 4 >>> >>> # [buildhw-x86-09:1135574] *** MPI_ERR_RMA_RANGE: invalid RMA address >>> range >>> >>> # [buildhw-x86-09:1135574] *** MPI_ERRORS_ARE_FATAL (processes in this >>> win will now abort, >>> >>> # [buildhw-x86-09:1135574] *** and potentially your MPI job) >>> >>> # [buildhw-x86-09.iad2.fedoraproject.org:1135567] 3 more processes have >>> sent help message help-mpi-errors.txt / mpi_errors_are_fatal >>> >>> # [buildhw-x86-09.iad2.fedoraproject.org:1135567] Set MCA parameter >>> "orte_base_help_aggregate" to 0 to see all help / error messages >>> >>> Looks like an error related to OpenMPI-4*: >>> https://github.com/open-mpi/ompi/issues/6374 >>> >>> Thank you. >>> >>> On 9/12/21 18:09, Pierre Jolivet wrote: >>>> Hello, >>>> Did you copy the files from https://gitlab.com/petsc/datafiles >>>> <https://gitlab.com/petsc/datafiles> before the make check? >>>> cfd.1.10 is not part of https://gitlab.com/petsc/petsc >>>> <https://gitlab.com/petsc/petsc>, so you either need to copy the files >>>> from the datafiles repository, or remove the >>>> --DATAFILESPATH=/home/sagitter/rpmbuild/BUILD/petsc-3.15.4/petsc-3.15.4/share/petsc/datafiles >>>> configure option. >>>> Thanks, >>>> Pierre >>>>> On 12 Sep 2021, at 6:02 PM, Antonio T. sagitter >>>>> <sagit...@fedoraproject.org <mailto:sagit...@fedoraproject.org>> wrote: >>>>> >>>>> Hi all. >>>>> >>>>> This error is repeated when the tests are compiled in PETSc-3.15.4 >>>>> compilation: >>>>> https://paste.in/MhdNjf <https://paste.in/MhdNjf> >>>>> >>>>> This happens in Fedora 34 x86_64 with gcc-11.2.1 >>>>> >>>>> make.log and configure.log are attached >>>>> -- >>>>> --- >>>>> Antonio Trande >>>>> Fedora Project >>>>> mailto: sagit...@fedoraproject.org >>>>> GPG key: 0x29FBC85D7A51CC2F >>>>> GPG key server: https://keyserver1.pgp.com/ >>>>> <make_configure.zip><OpenPGP_0x29FBC85D7A51CC2F.asc> >>> >>> -- >>> --- >>> Antonio Trande >>> Fedora Project >>> mailto: sagit...@fedoraproject.org >>> GPG key: 0x29FBC85D7A51CC2F >>> GPG key server: https://keyserver1.pgp.com/ > > -- > --- > Antonio Trande > Fedora Project > mailto: sagit...@fedoraproject.org > GPG key: 0x29FBC85D7A51CC2F > GPG key server: https://keyserver1.pgp.com/
