Have mpi.py turn off the use of MPI windows for these versions of OpenMPI. Note this is already standard practice, we have the comment "Skip buggy MPICH versions" and a variety of checks based on bad versions.
Barry > On Sep 14, 2021, at 7:17 AM, Matthew Knepley <knep...@gmail.com> wrote: > > Okay, we have to send this to OpenMPI. Volunteers? > > Maybe we should note this in the FAQ, or installation, so we remember how to > fix it if someone else asks? > > Thanks, > > Matt > > On Tue, Sep 14, 2021 at 2:35 AM Stefano Zampini <stefano.zamp...@gmail.com > <mailto:stefano.zamp...@gmail.com>> wrote: > I can reproduce it even with OpenMPI 4.1.1 on a different machine (Ubuntu 18 > + AMD milan + clang from AOCC) and it is definitely an OpenMPI bug in the > vader BTL If I use tcp, everything runs smooth > > zampins@kanary:~/Devel/petsc$ cat > /home/zampins/local/etc/openmpi-mca-params.conf | grep btl > btl = tcp,self > zampins@kanary:~/Devel/petsc$ make -f gmakefile.test > vec_is_sf_tutorials-ex1_4 > Using MAKEFLAGS: > TEST arch-debug/tests/counts/vec_is_sf_tutorials-ex1_4.counts > ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create > ok > diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create > ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-dynamic > ok > diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-dynamic > ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-allocate > ok > diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-allocate > ok vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-create > ok > diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-create > ok vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-dynamic > ok > diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-dynamic > ok vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-allocate > ok > diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-allocate > ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-create > ok diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-create > ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-dynamic > ok > diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-dynamic > ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-allocate > ok > diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-allocate > > > zampins@kanary:~/Devel/petsc$ cat > /home/zampins/local/etc/openmpi-mca-params.conf | grep btl > btl = vader,tcp,self > zampins@kanary:~/Devel/petsc$ make -f gmakefile.test > vec_is_sf_tutorials-ex1_4 > Using MAKEFLAGS: > TEST arch-debug/tests/counts/vec_is_sf_tutorials-ex1_4.counts > ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create > not ok > diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-create # > Error code: 1 > # 43,46c43,46 > # < [0] 0: 4001 2000 2002 3002 4002 > # < [1] 0: 1001 3000 > # < [2] 0: 2001 4000 > # < [3] 0: 3001 1000 > # --- > # > [0] 0: 2002 2146435072 2 2146435072 38736240 > # > [1] 0: 3000 2146435072 > # > [2] 0: 2001 2146435072 > # > [3] 0: 3001 2146435072 > ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-dynamic > not ok > diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-dynamic > # Error code: 1 > # 43,46c43,46 > # < [0] 0: 4001 2000 2002 3002 4002 > # < [1] 0: 1001 3000 > # < [2] 0: 2001 4000 > # < [3] 0: 3001 1000 > # --- > # > [0] 0: 2002 2146435072 2 2146435072 0 > # > [1] 0: 3000 2146435072 > # > [2] 0: 2001 2146435072 > # > [3] 0: 3001 2146435072 > ok vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-allocate > ok > diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-fence_sf_window_flavor-allocate > # retrying > vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-create > not ok > vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-create # > Error code: 98 > # [1]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > # [1]PETSC ERROR: General MPI error > # [1]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank > # [1]PETSC ERROR: See https://petsc.org/release/faq/ > <https://petsc.org/release/faq/> for trouble shooting. > # [1]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b > GIT Date: 2021-09-13 14:01:22 +0000 > # [1]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa > <http://kanary.kaust.edu.sa/> by zampins Tue Sep 14 09:31:42 2021 > # [1]PETSC ERROR: [2]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > # [2]PETSC ERROR: General MPI error > # [2]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank > # [2]PETSC ERROR: See https://petsc.org/release/faq/ > <https://petsc.org/release/faq/> for trouble shooting. > # [2]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b > GIT Date: 2021-09-13 14:01:22 +0000 > # [2]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa > <http://kanary.kaust.edu.sa/> by zampins Tue Sep 14 09:31:42 2021 > # [2]PETSC ERROR: Configure options --with-cc=/home/zampins/local/bin/mpicc > --with-cxx-dialect=c++14 --with-cxx=/home/zampins/local/bin/mpicxx > --with-debugging=1 --with-fc=/home/zampins/local/bin/mpifort > --with-fortran-bindings=0 --with-hip-dir=/opt/rocm --with-hip=1 > --with-hypre-dir=/home/zampins/local-petsc > --with-kokkos-dir=/home/zampins/local-petsc > --with-kokkos-kernels-dir=/home/zampins/local-petsc > --with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include > --with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]" > HIPFLAGS=--amdgpu-target=gfx908 > HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug > # [2]PETSC ERROR: #1 PetscSFGetGroups() at > /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166 > # [2]PETSC ERROR: #2 PetscSFSetUp_Window() at > /home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708 > # [2]PETSC ERROR: #3 PetscSFSetUp() at > /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318 > # [2]PETSC ERROR: #4 main() at > /home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172 > # [2]PETSC ERROR: PETSc Option Table entries: > # [2]PETSC ERROR: -sf_type window > # [2]PETSC ERROR: -sf_window_flavor create > # [2]PETSC ERROR: -sf_window_sync active > # [2]PETSC ERROR: -test_gather > # [2]PETSC ERROR: ----------------End of Error Message -------send entire > error message to petsc-ma...@mcs.anl.gov---------- > # [3]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > # [3]PETSC ERROR: General MPI error > # [3]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank > # [3]PETSC ERROR: See https://petsc.org/release/faq/ > <https://petsc.org/release/faq/> for trouble shooting. > # [3]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b > GIT Date: 2021-09-13 14:01:22 +0000 > # [3]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa > <http://kanary.kaust.edu.sa/> by zampins Tue Sep 14 09:31:42 2021 > # [3]PETSC ERROR: Configure options --with-cc=/home/zampins/local/bin/mpicc > --with-cxx-dialect=c++14 --with-cxx=/home/zampins/local/bin/mpicxx > --with-debugging=1 --with-fc=/home/zampins/local/bin/mpifort > --with-fortran-bindings=0 --with-hip-dir=/opt/rocm --with-hip=1 > --with-hypre-dir=/home/zampins/local-petsc > --with-kokkos-dir=/home/zampins/local-petsc > --with-kokkos-kernels-dir=/home/zampins/local-petsc > --with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include > --with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]" > HIPFLAGS=--amdgpu-target=gfx908 > HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug > # [3]PETSC ERROR: #1 PetscSFGetGroups() at > /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166 > # [3]PETSC ERROR: #2 PetscSFSetUp_Window() at > /home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708 > # [3]PETSC ERROR: #3 PetscSFSetUp() at > /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318 > # [3]PETSC ERROR: #4 main() at > /home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172 > # [3]PETSC ERROR: PETSc Option Table entries: > # [3]PETSC ERROR: -sf_type window > # [3]PETSC ERROR: -sf_window_flavor create > # [3]PETSC ERROR: Configure options --with-cc=/home/zampins/local/bin/mpicc > --with-cxx-dialect=c++14 --with-cxx=/home/zampins/local/bin/mpicxx > --with-debugging=1 --with-fc=/home/zampins/local/bin/mpifort > --with-fortran-bindings=0 --with-hip-dir=/opt/rocm --with-hip=1 > --with-hypre-dir=/home/zampins/local-petsc > --with-kokkos-dir=/home/zampins/local-petsc > --with-kokkos-kernels-dir=/home/zampins/local-petsc > --with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include > --with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]" > HIPFLAGS=--amdgpu-target=gfx908 > HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug > # [1]PETSC ERROR: #1 PetscSFGetGroups() at > /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166 > # [1]PETSC ERROR: #2 PetscSFSetUp_Window() at > /home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708 > # [1]PETSC ERROR: #3 PetscSFSetUp() at > /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318 > # [1]PETSC ERROR: #4 main() at > /home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172 > # [1]PETSC ERROR: PETSc Option Table entries: > # [1]PETSC ERROR: -sf_type window > # [1]PETSC ERROR: -sf_window_flavor create > # [1]PETSC ERROR: -sf_window_sync active > # [1]PETSC ERROR: -test_gather > # [1]PETSC ERROR: ----------------End of Error Message -------send entire > error message to petsc-ma...@mcs.anl.gov---------- > # -sf_window_sync active > # [3]PETSC ERROR: -test_gather > # [3]PETSC ERROR: ----------------End of Error Message -------send entire > error message to petsc-ma...@mcs.anl.gov---------- > # -------------------------------------------------------------------------- > # MPI_ABORT was invoked on rank 2 in communicator MPI_COMM_WORLD > # with errorcode 98. > # > # NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. > # You may or may not see output from other processes, depending on > # exactly when Open MPI kills them. > # -------------------------------------------------------------------------- > # [kanary.kaust.edu.sa:115527 <http://kanary.kaust.edu.sa:115527>] 2 more > processes have sent help message help-mpi-api.txt / mpi-abort > # [kanary.kaust.edu.sa:115527 <http://kanary.kaust.edu.sa:115527>] Set MCA > parameter "orte_base_help_aggregate" to 0 to see all help / error messages > ok vec_is_sf_tutorials-ex1_4 # SKIP Command failed so no diff > # retrying > vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-dynamic > not ok > vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-dynamic # > Error code: 98 > # [1]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > # [1]PETSC ERROR: General MPI error > # [1]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank > # [1]PETSC ERROR: See https://petsc.org/release/faq/ > <https://petsc.org/release/faq/> for trouble shooting. > # [1]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b > GIT Date: 2021-09-13 14:01:22 +0000 > # [1]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa > <http://kanary.kaust.edu.sa/> by zampins Tue Sep 14 09:31:45 2021 > # [1]PETSC ERROR: Configure options --with-cc=/home/zampins/local/bin/mpicc > --with-cxx-dialect=c++14 --with-cxx=/home/zampins/local/bin/mpicxx > --with-debugging=1 --with-fc=/home/zampins/local/bin/mpifort > --with-fortran-bindings=0 --with-hip-dir=/opt/rocm --with-hip=1 > --with-hypre-dir=/home/zampins/local-petsc > --with-kokkos-dir=/home/zampins/local-petsc > --with-kokkos-kernels-dir=/home/zampins/local-petsc > --with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include > --with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]" > HIPFLAGS=--amdgpu-target=gfx908 > HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug > # [1]PETSC ERROR: #1 PetscSFGetGroups() at > /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166 > # [1]PETSC ERROR: #2 PetscSFSetUp_Window() at > /home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708 > # [1]PETSC ERROR: #3 PetscSFSetUp() at > /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318 > # [1]PETSC ERROR: #4 main() at > /home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172 > # [1]PETSC ERROR: PETSc Option Table entries: > # [1]PETSC ERROR: -sf_type window > # [1]PETSC ERROR: [2]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > # [2]PETSC ERROR: General MPI error > # [2]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank > # [2]PETSC ERROR: See https://petsc.org/release/faq/ > <https://petsc.org/release/faq/> for trouble shooting. > # [2]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b > GIT Date: 2021-09-13 14:01:22 +0000 > # [2]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa > <http://kanary.kaust.edu.sa/> by zampins Tue Sep 14 09:31:45 2021 > # [2]PETSC ERROR: Configure options --with-cc=/home/zampins/local/bin/mpicc > --with-cxx-dialect=c++14 --with-cxx=/home/zampins/local/bin/mpicxx > --with-debugging=1 --with-fc=/home/zampins/local/bin/mpifort > --with-fortran-bindings=0 --with-hip-dir=/opt/rocm --with-hip=1 > --with-hypre-dir=/home/zampins/local-petsc > --with-kokkos-dir=/home/zampins/local-petsc > --with-kokkos-kernels-dir=/home/zampins/local-petsc > --with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include > --with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]" > HIPFLAGS=--amdgpu-target=gfx908 > HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug > # [2]PETSC ERROR: #1 PetscSFGetGroups() at > /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166 > # [2]PETSC ERROR: #2 PetscSFSetUp_Window() at > /home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708 > # [2]PETSC ERROR: #3 PetscSFSetUp() at > /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318 > # [2]PETSC ERROR: #4 main() at > /home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172 > # [2]PETSC ERROR: PETSc Option Table entries: > # [2]PETSC ERROR: -sf_type window > # [2]PETSC ERROR: -sf_window_flavor dynamic > # [2]PETSC ERROR: -sf_window_sync active > # [2]PETSC ERROR: -test_gather > # [2]PETSC ERROR: ----------------End of Error Message -------send entire > error message to petsc-ma...@mcs.anl.gov---------- > # [3]PETSC ERROR: --------------------- Error Message > -------------------------------------------------------------- > # [3]PETSC ERROR: General MPI error > # [3]PETSC ERROR: MPI error 6 MPI_ERR_RANK: invalid rank > # [3]PETSC ERROR: See https://petsc.org/release/faq/ > <https://petsc.org/release/faq/> for trouble shooting. > # [3]PETSC ERROR: Petsc Development GIT revision: v3.15.4-783-g168bb9f76b > GIT Date: 2021-09-13 14:01:22 +0000 > # [3]PETSC ERROR: ../ex1 on a arch-debug named kanary.kaust.edu.sa > <http://kanary.kaust.edu.sa/> by zampins Tue Sep 14 09:31:45 2021 > # [3]PETSC ERROR: Configure options --with-cc=/home/zampins/local/bin/mpicc > --with-cxx-dialect=c++14 --with-cxx=/home/zampins/local/bin/mpicxx > --with-debugging=1 --with-fc=/home/zampins/local/bin/mpifort > --with-fortran-bindings=0 --with-hip-dir=/opt/rocm --with-hip=1 > --with-hypre-dir=/home/zampins/local-petsc > --with-kokkos-dir=/home/zampins/local-petsc > --with-kokkos-kernels-dir=/home/zampins/local-petsc > --with-blaslapack-include=/home/zampins/local-aocl/aocc/3.0-6/include > --with-blaslapack-lib="[/home/zampins/local-aocl/aocc/3.0-6/lib/liblapacke.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libflame.a,/home/zampins/local-aocl/aocc/3.0-6/lib/libblis-mt.a]" > HIPFLAGS=--amdgpu-target=gfx908 > HIPPPFLAGS=-I/home/zampins/local-petsc/include PETSC_ARCH=arch-debug > # [3]PETSC ERROR: #1 PetscSFGetGroups() at > /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:1166 > # [3]PETSC ERROR: #2 PetscSFSetUp_Window() at > /home/zampins/Devel/petsc/src/vec/is/sf/impls/window/sfwindow.c:708 > # [3]PETSC ERROR: #3 PetscSFSetUp() at > /home/zampins/Devel/petsc/src/vec/is/sf/interface/sf.c:318 > # [3]PETSC ERROR: #4 main() at > /home/zampins/Devel/petsc/src/vec/is/sf/tutorials/ex1.c:172 > # [3]PETSC ERROR: PETSc Option Table entries: > # [3]PETSC ERROR: -sf_type window > # [3]PETSC ERROR: -sf_window_flavor dynamic > # [3]PETSC ERROR: -sf_window_sync active > # [3]PETSC ERROR: -test_gather > # [3]PETSC ERROR: ----------------End of Error Message -------send entire > error message to petsc-ma...@mcs.anl.gov---------- > # -sf_window_flavor dynamic > # [1]PETSC ERROR: -sf_window_sync active > # [1]PETSC ERROR: -test_gather > # [1]PETSC ERROR: ----------------End of Error Message -------send entire > error message to petsc-ma...@mcs.anl.gov---------- > # -------------------------------------------------------------------------- > # MPI_ABORT was invoked on rank 3 in communicator MPI_COMM_WORLD > # with errorcode 98. > # > # NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. > # You may or may not see output from other processes, depending on > # exactly when Open MPI kills them. > # -------------------------------------------------------------------------- > # [kanary.kaust.edu.sa:115572 <http://kanary.kaust.edu.sa:115572>] 2 more > processes have sent help message help-mpi-api.txt / mpi-abort > # [kanary.kaust.edu.sa:115572 <http://kanary.kaust.edu.sa:115572>] Set MCA > parameter "orte_base_help_aggregate" to 0 to see all help / error messages > ok vec_is_sf_tutorials-ex1_4 # SKIP Command failed so no diff > ok vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-allocate > ok > diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-active_sf_window_flavor-allocate > ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-create > not ok > diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-create # > Error code: 1 > # 43,46c43,46 > # < [0] 0: 4001 2000 2002 3002 4002 > # < [1] 0: 1001 3000 > # < [2] 0: 2001 4000 > # < [3] 0: 3001 1000 > # --- > # > [0] 0: 4002 2146435072 2 2146435072 34619728 > # > [1] 0: 3000 2146435072 > # > [2] 0: 4000 2146435072 > # > [3] 0: 3001 2146435072 > ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-dynamic > not ok > diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-dynamic # > Error code: 1 > # 43,46c43,46 > # < [0] 0: 4001 2000 2002 3002 4002 > # < [1] 0: 1001 3000 > # < [2] 0: 2001 4000 > # < [3] 0: 3001 1000 > # --- > # > [0] 0: 4002 2146435072 2 2146435072 0 > # > [1] 0: 3000 2146435072 > # > [2] 0: 4000 2146435072 > # > [3] 0: 3001 2146435072 > ok vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-allocate > ok > diff-vec_is_sf_tutorials-ex1_4+sf_window_sync-lock_sf_window_flavor-allocate > > > > Il giorno mar 14 set 2021 alle ore 07:44 Stefano Zampini > <stefano.zamp...@gmail.com <mailto:stefano.zamp...@gmail.com>> ha scritto: > I'll see if I can reproduce > > Il Mar 14 Set 2021, 06:58 Junchao Zhang <junchao.zh...@gmail.com > <mailto:junchao.zh...@gmail.com>> ha scritto: > Hi, Stefano, > Ping you again to see if you want to resolve this problem before > petsc-3.16 > > --Junchao Zhang > > > On Sun, Sep 12, 2021 at 3:06 PM Antonio T. sagitter > <sagit...@fedoraproject.org <mailto:sagit...@fedoraproject.org>> wrote: > Unfortunately, it's not possible. I must use the OpenMPI provided by > Fedora build-system (these rpm builds of PETSc are for Fedora's > repositories), downloading external software is not permitted. > > On 9/12/21 21:10, Pierre Jolivet wrote: > > > >> On 12 Sep 2021, at 8:56 PM, Matthew Knepley <knep...@gmail.com > >> <mailto:knep...@gmail.com> > >> <mailto:knep...@gmail.com <mailto:knep...@gmail.com>>> wrote: > >> > >> On Sun, Sep 12, 2021 at 2:49 PM Antonio T. sagitter > >> <sagit...@fedoraproject.org <mailto:sagit...@fedoraproject.org> > >> <mailto:sagit...@fedoraproject.org <mailto:sagit...@fedoraproject.org>>> > >> wrote: > >> > >> Those attached are configure.log/make.log from a MPI build in > >> Fedora 34 > >> x86_64 where the error below occurred. > >> > >> > >> This is OpenMPI 4.1.0. Is that the only MPI you build? My first > >> inclination is that this is an MPI implementation bug. > >> > >> Junchao, do we have an OpenMPI build in the CI? > > > > config/examples/arch-ci-linux-cuda-double-64idx.py: > > '--download-openmpi=1', > > config/examples/arch-ci-linux-pkgs-dbg-ftn-interfaces.py: > > '--download-openmpi=1', > > config/examples/arch-ci-linux-pkgs-opt.py: '--download-openmpi=1', > > > > config/BuildSystem/config/packages/OpenMPI.py uses version 4.1.0 as well. > > I’m not sure PETSc is to blame here Antonio. You may want to try to > > ditch the OpenMPI shipped by your packet manager and try > > --download-openmpi as well, just for a quick sanity check. > > > > Thanks, > > Pierre > > > > -- > --- > Antonio Trande > Fedora Project > mailto: sagit...@fedoraproject.org <mailto:sagit...@fedoraproject.org> > GPG key: 0x29FBC85D7A51CC2F > GPG key server: https://keyserver1.pgp.com/ <https://keyserver1.pgp.com/> > > > -- > Stefano > > > -- > What most experimenters take for granted before they begin their experiments > is infinitely more interesting than any results to which their experiments > lead. > -- Norbert Wiener > > https://www.cse.buffalo.edu/~knepley/ <http://www.cse.buffalo.edu/~knepley/>