Dear Satish, Yes, I do have problems with external packages, so I downloaded them manually and move them into petsc-dev.
So the configure has options like rebecca at YuanWork:~/soft/petsc-dev$ ./config/configure.py --with-cc=gcc --with-fc=gfortran --download-f-blas-lapack=/home/rebecca/soft/petsc-dev/fblaslapack-3.1.1.tar.gz --download-mpich=/home/rebecca/soft/petsc-dev/mpich2-1.2.1.tar.gz --download-sowing=/home/rebecca/soft/petsc-dev/sowing-1.1.15.tar.gz --download-c2html=/home/rebecca/soft/petsc-dev/c2html.tar.gz The Fortran compiler I have is g77 and gfortran. If I do not use Fortran, will this be fine? Cheers, Rebecca Quoting Satish Balay <balay at mcs.anl.gov>: > Ok - is your manual install '2. access tarballs directly from our > mercurial server.? > http://www.mcs.anl.gov/petsc/petsc-as/developers/index.html > > > And do you have problem with --download-pacakge options due to the > proxy issues? If so - that might explain the problem. > > petsc-dev - with 'hg' - or with 'tarballs from mercurial' server > require sowing package for the fortran interface. If configure is > unable to install sowing - then fortran interface is not generated. > > Thus unresolved symbol errors when compiling fortran examples. > > This can be verified by looking at configure.log and make.log for this > build. > > Satish > > > On Mon, 25 Jan 2010, Satish Balay wrote: > >> >> On Mon, 25 Jan 2010, (Rebecca) Xuefei YUAN wrote: >> >> > Dear Satish, >> > >> > I switched to install it manually >> >> What do you mean? Did you get the nightly tarball? >> >> > and encounter an error when "make test". >> >> Did the build go through fine without errors?? >> >> Send over configure.log and make.log to petsc-maint. >> >> Satish >> >> > Here are error messages: >> > >> > Completed building libraries >> > ========================================= >> > Now to check if the libraries are working do: make test >> > ========================================= >> > rebecca at YuanWork:~/soft/petsc-dev$ make test >> > Running test examples to verify correct installation >> > C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1 MPI >> > process >> > C/C++ example src/snes/examples/tutorials/ex19 run successfully with 2 MPI >> > processes >> > --------------Error detected during compile or >> link!----------------------- >> > See >> http://www.mcs.anl.gov/petsc/petsc-2/documentation/troubleshooting.html >> > /home/rebecca/soft/petsc-dev/linux-gnu-c-debug/bin/mpif90 -c -Wall >> > -Wno-unused-variable -g >> > -I/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/include >> > -I/home/rebecca/soft/petsc-dev/include >> > -I/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/include >> > -I/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/include >> > -I/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/include -o >> ex5f.o ex5f.F >> > /home/rebecca/soft/petsc-dev/linux-gnu-c-debug/bin/mpif90 -Wall >> > -Wno-unused-variable -g -o ex5f ex5f.o >> > -Wl,-rpath,/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib >> > -L/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib -lpetscsnes >> -lpetscksp >> > -lpetscdm -lpetscmat -lpetscvec -lpetsc -lX11 >> > -Wl,-rpath,/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib >> > -L/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib -lflapack >> -lfblas -lnsl >> > -lrt -lm -L/home/rebecca/soft/petsc-dev/linux-gnu-c-debug/lib >> > -L/usr/lib/gcc/i486-linux-gnu/4.2.4 -ldl -lmpich -lopa -lpthread >> -lrt -lgcc_s >> > -lmpichf90 -lgfortran -lm -lm -ldl -lmpich -lopa -lpthread -lrt >> -lgcc_s -ldl >> > ex5f.o: In function `MAIN__': >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:103: >> undefined >> > reference to `snescreate_' >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:120: >> undefined >> > reference to `dacreateglobalvector_' >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:121: >> undefined >> > reference to `vecduplicate_' >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:131: >> undefined >> > reference to `dagetcorners_' >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:133: >> undefined >> > reference to `dagetghostcorners_' >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:211: >> undefined >> > reference to `snessetfromoptions_' >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:223: >> undefined >> > reference to `snesgetiterationnumber_' >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:235: >> undefined >> > reference to `matdestroy_' >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:236: >> undefined >> > reference to `matdestroy_' >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:237: >> undefined >> > reference to `vecdestroy_' >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:238: >> undefined >> > reference to `vecdestroy_' >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:239: >> undefined >> > reference to `snesdestroy_' >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:240: >> undefined >> > reference to `dadestroy_' >> > ex5f.o: In function `forminitialguess_': >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:286: >> undefined >> > reference to `dmgetlocalvector_' >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:299: >> undefined >> > reference to `dalocaltoglobal_' >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:300: >> undefined >> > reference to `dmrestorelocalvector_' >> > ex5f.o: In function `formjacobianlocal_': >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:523: >> undefined >> > reference to `matsetvalueslocal_' >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:538: >> undefined >> > reference to `matsetvalueslocal_' >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:542: >> undefined >> > reference to `matassemblybegin_' >> > >> /home/rebecca/soft/petsc-dev/src/snes/examples/tutorials/ex5f.F:543: >> undefined >> > reference to `matassemblyend_' >> > collect2: ld returned 1 exit status >> > make[3]: [ex5f] Error 1 (ignored) >> > /bin/rm -f ex5f.o >> > Completed test examples >> > >> > What could possibly wrong? >> > >> > Thanks! >> > >> > Rebecca >> > >> > >> > >> > >> > Quoting Satish Balay <balay at mcs.anl.gov>: >> > >> > > Sorry - forgot to mention the url >> > > >> > > >> http://mail.openjdk.java.net/pipermail/build-dev/2007-December/000628.html >> > > >> > > Satish >> > > >> > > On Mon, 25 Jan 2010, Satish Balay wrote: >> > > >> > > > Do you have to use proxy for your http connections? If so - perhaps >> > > > you can try adding the settings to ~/.hgrc - as this url indicates and >> > > > see if it fixes the problem. >> > > > >> > > > Satish >> > > > >> > > > On Mon, 25 Jan 2010, (Rebecca) Xuefei YUAN wrote: >> > > > >> > > > > Hi,All, >> > > > > >> > > > > I try to install a pets-dev locally according to the instruction >> > > > > >> > > > > http://www.mcs.anl.gov/petsc/petsc-as/developers/index.html >> > > > > >> > > > > I have installed mercurial, but when I get the second step, >> I get some >> > > > > error >> > > > > like: >> > > > > >> > > > > rebecca at YuanWork:~/soft$ hg clone >> > > > > http://petsc.cs.iit.edu/petsc/petsc-dev >> > > > > destination directory: petsc-dev >> > > > > abort: error: Name or service not known >> > > > > >> > > > > Is there anything wrong? >> > > > > >> > > > > Thanks! >> > > > > >> > > > > >> > > > >> > > > >> > > >> > > >> > > >> > >> > >> > >> > >> >> > > > -- (Rebecca) Xuefei YUAN Department of Applied Physics and Applied Mathematics Columbia University Tel:917-399-8032 www.columbia.edu/~xy2102
