Hi there,
My code woks well for the petsc-3.4.2 debug version, but get the
following errors for the no-debug version. Do you have any suggestions
for debugging the code?
Best,
Rongliang
-------------
[2]PETSC ERROR: [8]PETSC ERROR:
------------------------------------------------------------------------
[8]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[8]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[8]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[8]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[8]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[8]PETSC ERROR: to get more information on the crash.
[8]PETSC ERROR: --------------------- Error Message
------------------------------------
[8]PETSC ERROR: Signal received!
[8]PETSC ERROR:
------------------------------------------------------------------------
[8]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[8]PETSC ERROR: See docs/changes/index.html for recent updates.
[8]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[8]PETSC ERROR: See docs/index.html for manual pages.
[8]PETSC ERROR:
------------------------------------------------------------------------
[8]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0804 by
ronglian Tue Oct 22 22:06:05 2013
[8]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.4.3/Janus-nodebug-64bit/lib
[8]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
[8]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4
--known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8
--known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4
--known-mpi-long-double=1 --known-mpi-c-double-complex=0
--download-blacs=1 --download-f-blas-lapack=1 --download-metis=1
--download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1
--known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
--with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
--download-exodusii=1 --download-hdf5=1 --download-netcdf=1
--known-64-bit-blas-indices
[8]PETSC ERROR:
------------------------------------------------------------------------
[8]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
My Breakpoint: SetupASM Done !!!!
[186]PETSC ERROR:
------------------------------------------------------------------------
[186]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[186]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[186]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[186]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[186]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[186]PETSC ERROR: to get more information on the crash.
[186]PETSC ERROR: --------------------- Error Message
------------------------------------
[186]PETSC ERROR: [194]PETSC ERROR: [160]PETSC ERROR: [218]PETSC ERROR:
[108]PETSC ERROR:
------------------------------------------------------------------------
[108]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[108]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[108]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[108]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[108]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[108]PETSC ERROR: to get more information on the crash.
[108]PETSC ERROR: --------------------- Error Message
------------------------------------
[108]PETSC ERROR: Signal received!
[108]PETSC ERROR:
------------------------------------------------------------------------
[108]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[108]PETSC ERROR: See docs/changes/index.html for recent updates.
[108]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[90]PETSC ERROR:
------------------------------------------------------------------------
[90]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[90]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[90]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[90]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[90]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[90]PETSC ERROR: to get more information on the crash.
[90]PETSC ERROR: --------------------- Error Message
------------------------------------
[90]PETSC ERROR: Signal received!
[90]PETSC ERROR:
------------------------------------------------------------------------
[90]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[90]PETSC ERROR: See docs/changes/index.html for recent updates.
[184]PETSC ERROR: [0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[0]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message
------------------------------------
[0]PETSC ERROR: Signal received!
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0804 by
ronglian Tue Oct 22 22:06:05 2013
[0]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.4.3/Janus-nodebug-64bit/lib
[0]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
[0]PETSC ERROR: [24]PETSC ERROR:
------------------------------------------------------------------------
[24]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[24]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[24]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[24]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[24]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[24]PETSC ERROR: to get more information on the crash.
[24]PETSC ERROR: --------------------- Error Message
------------------------------------
[24]PETSC ERROR: Signal received!
[24]PETSC ERROR:
------------------------------------------------------------------------
[24]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[24]PETSC ERROR: See docs/changes/index.html for recent updates.
[24]PETSC ERROR: [56]PETSC ERROR:
------------------------------------------------------------------------
[56]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[56]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[56]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[56]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[56]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[56]PETSC ERROR: to get more information on the crash.
[76]PETSC ERROR:
------------------------------------------------------------------------
[76]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[76]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[76]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[76]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[76]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[76]PETSC ERROR: to get more information on the crash.
[76]PETSC ERROR: --------------------- Error Message
------------------------------------
[76]PETSC ERROR: Signal received!
[76]PETSC ERROR:
------------------------------------------------------------------------
[76]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[76]PETSC ERROR: See docs/changes/index.html for recent updates.
[76]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[168]PETSC ERROR:
------------------------------------------------------------------------
[168]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[168]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[168]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[168]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[168]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[168]PETSC ERROR: to get more information on the crash.
[168]PETSC ERROR: --------------------- Error Message
------------------------------------
[168]PETSC ERROR: Signal received!
[168]PETSC ERROR:
------------------------------------------------------------------------
[168]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[168]PETSC ERROR: See docs/changes/index.html for recent updates.
[168]PETSC ERROR: [112]PETSC ERROR: [84]PETSC ERROR: Configure options
--known-level1-dcache-size=32768 --known-level1-dcache-linesize=64
--known-level1-dcache-assoc=8 --known-memcmp-ok=1 --known-sizeof-char=1
--known-sizeof-void-p=8 --known-sizeof-short=2 --known-sizeof-int=4
--known-sizeof-long=8 --known-sizeof-long-long=8 --known-sizeof-float=4
--known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8
--known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4
--known-mpi-long-double=1 --known-mpi-c-double-complex=0
--download-blacs=1 --download-f-blas-lapack=1 --download-metis=1
--download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1
--known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
--with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
--download-exodusii=1 --download-hdf5=1 --download-netcdf=1
--known-64-bit-blas-indices
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
[26]PETSC ERROR: [236]PETSC ERROR:
------------------------------------------------------------------------
[236]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[236]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[236]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[236]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[236]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[236]PETSC ERROR: to get more information on the crash.
[236]PETSC ERROR: --------------------- Error Message
------------------------------------
[236]PETSC ERROR: Signal received!
[236]PETSC ERROR:
------------------------------------------------------------------------
[236]PETSC ERROR: [162]PETSC ERROR:
------------------------------------------------------------------------
[162]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[162]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[162]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[162]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[162]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[162]PETSC ERROR: to get more information on the crash.
[162]PETSC ERROR: --------------------- Error Message
------------------------------------
[162]PETSC ERROR: Signal received!
[162]PETSC ERROR:
------------------------------------------------------------------------
[162]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[162]PETSC ERROR: See docs/changes/index.html for recent updates.
[162]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[162]PETSC ERROR: See docs/index.html for manual pages.
[162]PETSC ERROR:
------------------------------------------------------------------------
[162]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0845 by
ronglian Tue Oct 22 22:06:05 2013
[162]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.4.3/Janus-nodebug-64bit/lib
[162]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
[162]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4
--known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8
--known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4
--known-mpi-long-double=1 --known-mpi-c-double-complex=0
--download-blacs=1 --download-f-blas-lapack=1 --download-metis=1
--download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1
--known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
--with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
--download-exodusii=1 --download-hdf5=1 --download-netcdf=1
--known-64-bit-blas-indices
[162]PETSC ERROR:
------------------------------------------------------------------------
[162]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
[64]PETSC ERROR:
------------------------------------------------------------------------
[64]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[64]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[64]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[64]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[64]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[64]PETSC ERROR: to get more information on the crash.
[64]PETSC ERROR: --------------------- Error Message
------------------------------------
[64]PETSC ERROR: Signal received!
[64]PETSC ERROR:
------------------------------------------------------------------------
Signal received!
[186]PETSC ERROR:
------------------------------------------------------------------------
[186]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[186]PETSC ERROR: See docs/changes/index.html for recent updates.
[186]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[186]PETSC ERROR: See docs/index.html for manual pages.
[186]PETSC ERROR:
------------------------------------------------------------------------
[186]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0868 by
ronglian Tue Oct 22 22:06:04 2013
[186]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.4.3/Janus-nodebug-64bit/lib
[186]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
[186]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4
--known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8
--known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4
--known-mpi-long-double=1 --known-mpi-c-double-complex=0
--download-blacs=1 --download-f-blas-lapack=1 --download-metis=1
--download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1
--known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
--with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
--download-exodusii=1 --download-hdf5=1 --download-netcdf=1
--known-64-bit-blas-indices
[186]PETSC ERROR:
------------------------------------------------------------------------
[186]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
[12]PETSC ERROR: [192]PETSC ERROR:
------------------------------------------------------------------------
[192]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[192]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[192]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[192]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[192]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[192]PETSC ERROR: to get more information on the crash.
[192]PETSC ERROR: --------------------- Error Message
------------------------------------
[192]PETSC ERROR: Signal received!
[192]PETSC ERROR:
------------------------------------------------------------------------
[192]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[192]PETSC ERROR: See docs/changes/index.html for recent updates.
[192]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[192]PETSC ERROR: See docs/index.html for manual pages.
[192]PETSC ERROR:
------------------------------------------------------------------------
[192]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0870 by
ronglian Tue Oct 22 22:06:05 2013
[192]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.4.3/Janus-nodebug-64bit/lib
[192]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
[192]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4
--known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8
--known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4
--known-mpi-long-double=1 --known-mpi-c-double-complex=0
--download-blacs=1 --download-f-blas-lapack=1 --download-metis=1
--download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1
--known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
--with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
--download-exodusii=1 --download-hdf5=1 --download-netcdf=1
--known-64-bit-blas-indices
[192]PETSC ERROR:
------------------------------------------------------------------------
[192]PETSC ERROR: [96]PETSC ERROR: [128]PETSC ERROR: [36]PETSC ERROR:
[204]PETSC ERROR:
------------------------------------------------------------------------
[204]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[204]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[204]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[204]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[204]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[204]PETSC ERROR: to get more information on the crash.
[204]PETSC ERROR: --------------------- Error Message
------------------------------------
[204]PETSC ERROR: Signal received!
[204]PETSC ERROR:
------------------------------------------------------------------------
[204]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[204]PETSC ERROR: See docs/changes/index.html for recent updates.
[204]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[204]PETSC ERROR: See docs/index.html for manual pages.
[204]PETSC ERROR: [208]PETSC ERROR: [114]PETSC ERROR:
------------------------------------------------------------------------
[114]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[114]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[114]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[114]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[114]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[114]PETSC ERROR: to get more information on the crash.
[114]PETSC ERROR: --------------------- Error Message
------------------------------------
[114]PETSC ERROR: Signal received!
[114]PETSC ERROR:
------------------------------------------------------------------------
[114]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[114]PETSC ERROR: See docs/changes/index.html for recent updates.
[114]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[114]PETSC ERROR: See docs/index.html for manual pages.
[114]PETSC ERROR:
------------------------------------------------------------------------
[114]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0818 by
ronglian Tue Oct 22 22:06:05 2013
[114]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.4.3/Janus-nodebug-64bit/lib
[114]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
[114]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4
--known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8
--known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4
--known-mpi-long-double=1 --known-mpi-c-double-complex=0
--download-blacs=1 --download-f-blas-lapack=1 --download-metis=1
--download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1
--known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
--with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
--download-exodusii=1 --download-hdf5=1 --download-netcdf=1
--known-64-bit-blas-indices
[114]PETSC ERROR:
------------------------------------------------------------------------
[114]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
[164]PETSC ERROR:
------------------------------------------------------------------------
[164]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[164]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[164]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[164]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[164]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[164]PETSC ERROR: to get more information on the crash.
[164]PETSC ERROR: --------------------- Error Message
------------------------------------
[164]PETSC ERROR: Signal received!
[164]PETSC ERROR:
------------------------------------------------------------------------
[164]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[164]PETSC ERROR: See docs/changes/index.html for recent updates.
[164]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[164]PETSC ERROR: See docs/index.html for manual pages.
[164]PETSC ERROR:
------------------------------------------------------------------------
[164]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0845 by
ronglian Tue Oct 22 22:06:05 2013
[164]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.4.3/Janus-nodebug-64bit/lib
[164]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
[164]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4
--known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8
--known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4
--known-mpi-long-double=1 --known-mpi-c-double-complex=0
--download-blacs=1 --download-f-blas-lapack=1 --download-metis=1
--download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1
--known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
--with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
--download-exodusii=1 --download-hdf5=1 --download-netcdf=1
--known-64-bit-blas-indices
[164]PETSC ERROR:
------------------------------------------------------------------------
[164]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
[144]PETSC ERROR:
------------------------------------------------------------------------
[144]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[144]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[144]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[144]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[144]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[144]PETSC ERROR: to get more information on the crash.
[144]PETSC ERROR: --------------------- Error Message
------------------------------------
[144]PETSC ERROR: Signal received!
[144]PETSC ERROR:
------------------------------------------------------------------------
[144]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[144]PETSC ERROR: See docs/changes/index.html for recent updates.
[144]PETSC ERROR: [176]PETSC ERROR:
------------------------------------------------------------------------
[176]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[176]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[176]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[176]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[176]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[176]PETSC ERROR: to get more information on the crash.
[176]PETSC ERROR: --------------------- Error Message
------------------------------------
[176]PETSC ERROR: Signal received!
[176]PETSC ERROR:
------------------------------------------------------------------------
[176]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[176]PETSC ERROR: See docs/changes/index.html for recent updates.
[176]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[176]PETSC ERROR: See docs/index.html for manual pages.
[176]PETSC ERROR:
------------------------------------------------------------------------
[176]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0856 by
ronglian Tue Oct 22 22:06:05 2013
[176]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.4.3/Janus-nodebug-64bit/lib
[176]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
[176]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4
--known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8
--known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4
--known-mpi-long-double=1 --known-mpi-c-double-complex=0
--download-blacs=1 --download-f-blas-lapack=1 --download-metis=1
--download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1
--known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
--with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
--download-exodusii=1 --download-hdf5=1 --download-netcdf=1
--known-64-bit-blas-indices
[176]PETSC ERROR:
------------------------------------------------------------------------
[176]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
[82]PETSC ERROR:
------------------------------------------------------------------------
[82]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[82]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[82]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[82]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[82]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[82]PETSC ERROR: to get more information on the crash.
[82]PETSC ERROR: --------------------- Error Message
------------------------------------
[82]PETSC ERROR: Signal received!
[82]PETSC ERROR:
------------------------------------------------------------------------
[82]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[82]PETSC ERROR: See docs/changes/index.html for recent updates.
[82]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[82]PETSC ERROR: See docs/index.html for manual pages.
[82]PETSC ERROR:
------------------------------------------------------------------------
[82]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0811 by
ronglian Tue Oct 22 22:06:05 2013
[82]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.4.3/Janus-nodebug-64bit/lib
[82]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
[82]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4
--known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8
--known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4
--known-mpi-long-double=1 --known-mpi-c-double-complex=0
--download-blacs=1 --download-f-blas-lapack=1 --download-metis=1
--download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1
--known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
--with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
--download-exodusii=1 --download-hdf5=1 --download-netcdf=1
--known-64-bit-blas-indices
[82]PETSC ERROR:
------------------------------------------------------------------------
[82]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
[32]PETSC ERROR:
------------------------------------------------------------------------
[32]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[32]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[32]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[32]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[32]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[32]PETSC ERROR: to get more information on the crash.
[32]PETSC ERROR: --------------------- Error Message
------------------------------------
[32]PETSC ERROR: Signal received!
[32]PETSC ERROR:
------------------------------------------------------------------------
[32]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[32]PETSC ERROR: See docs/changes/index.html for recent updates.
[32]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[32]PETSC ERROR: See docs/index.html for manual pages.
[32]PETSC ERROR:
------------------------------------------------------------------------
[32]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0737 by
ronglian Tue Oct 22 22:06:04 2013
[32]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.4.3/Janus-nodebug-64bit/lib
[32]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
[32]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4
--known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8
--known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4
--known-mpi-long-double=1 --known-mpi-c-double-complex=0
--download-blacs=1 --download-f-blas-lapack=1 --download-metis=1
--download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1
--known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
--with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
--download-exodusii=1 --download-hdf5=1 --download-netcdf=1
--known-64-bit-blas-indices
[32]PETSC ERROR:
------------------------------------------------------------------------
[32]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
[72]PETSC ERROR: [220]PETSC ERROR:
------------------------------------------------------------------------
[220]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[220]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[220]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[220]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[220]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[220]PETSC ERROR: to get more information on the crash.
[220]PETSC ERROR: --------------------- Error Message
------------------------------------
[220]PETSC ERROR: Signal received!
[220]PETSC ERROR:
------------------------------------------------------------------------
[220]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[220]PETSC ERROR: See docs/changes/index.html for recent updates.
[220]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[220]PETSC ERROR: See docs/index.html for manual pages.
[220]PETSC ERROR:
------------------------------------------------------------------------
[220]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0880 by
ronglian Tue Oct 22 22:06:05 2013
[220]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.4.3/Janus-nodebug-64bit/lib
[220]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
[220]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4
--known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8
--known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4
--known-mpi-long-double=1 --known-mpi-c-double-complex=0
--download-blacs=1 --download-f-blas-lapack=1 --download-metis=1
--download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1
--known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
--with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
--download-exodusii=1 --download-hdf5=1 --download-netcdf=1
--known-64-bit-blas-indices
[220]PETSC ERROR:
------------------------------------------------------------------------
[220]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
[178]PETSC ERROR: [68]PETSC ERROR:
------------------------------------------------------------------------
[68]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[68]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[68]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[68]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[68]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[68]PETSC ERROR: to get more information on the crash.
[68]PETSC ERROR: --------------------- Error Message
------------------------------------
[68]PETSC ERROR: Signal received!
[68]PETSC ERROR:
------------------------------------------------------------------------
[68]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[68]PETSC ERROR: See docs/changes/index.html for recent updates.
[68]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[68]PETSC ERROR: See docs/index.html for manual pages.
[68]PETSC ERROR:
------------------------------------------------------------------------
[68]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0810 by
ronglian Tue Oct 22 22:06:05 2013
[68]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.4.3/Janus-nodebug-64bit/lib
[68]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
[68]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4
--known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8
--known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4
--known-mpi-long-double=1 --known-mpi-c-double-complex=0
--download-blacs=1 --download-f-blas-lapack=1 --download-metis=1
--download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1
--known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
--with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
--download-exodusii=1 --download-hdf5=1 --download-netcdf=1
--known-64-bit-blas-indices
[68]PETSC ERROR:
------------------------------------------------------------------------
[68]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
[88]PETSC ERROR:
------------------------------------------------------------------------
[88]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[88]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[88]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[88]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[88]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[88]PETSC ERROR: to get more information on the crash.
[88]PETSC ERROR: --------------------- Error Message
------------------------------------
[88]PETSC ERROR: Signal received!
[88]PETSC ERROR:
------------------------------------------------------------------------
[88]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[88]PETSC ERROR: See docs/changes/index.html for recent updates.
[88]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[88]PETSC ERROR: See docs/index.html for manual pages.
[88]PETSC ERROR:
------------------------------------------------------------------------
[88]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0814 by
ronglian Tue Oct 22 22:06:05 2013
[88]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.4.3/Janus-nodebug-64bit/lib
[88]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
[88]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4
--known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8
--known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4
--known-mpi-long-double=1 --known-mpi-c-double-complex=0
--download-blacs=1 --download-f-blas-lapack=1 --download-metis=1
--download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1
--known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
--with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
--download-exodusii=1 --download-hdf5=1 --download-netcdf=1
--known-64-bit-blas-indices
[88]PETSC ERROR:
------------------------------------------------------------------------
[88]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
[196]PETSC ERROR:
------------------------------------------------------------------------
[196]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[196]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[196]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[196]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[196]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[196]PETSC ERROR: to get more information on the crash.
[196]PETSC ERROR: --------------------- Error Message
------------------------------------
[196]PETSC ERROR: Signal received!
[196]PETSC ERROR:
------------------------------------------------------------------------
[196]PETSC ERROR: Petsc Release Version 3.4.2, unknown
[196]PETSC ERROR: See docs/changes/index.html for recent updates.
[196]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[196]PETSC ERROR: See docs/index.html for manual pages.
[196]PETSC ERROR:
------------------------------------------------------------------------
[196]PETSC ERROR: ./fsi3d on a Janus-nodebug-64bit named node0870 by
ronglian Tue Oct 22 22:06:05 2013
[196]PETSC ERROR: Libraries linked from
/projects/ronglian/soft/petsc-3.4.3/Janus-nodebug-64bit/lib
[196]PETSC ERROR: Configure run at Thu Oct 17 01:29:46 2013
[196]PETSC ERROR: Configure options --known-level1-dcache-size=32768
--known-level1-dcache-linesize=64 --known-level1-dcache-assoc=8
--known-memcmp-ok=1 --known-sizeof-char=1 --known-sizeof-void-p=8
--known-sizeof-short=2 --known-sizeof-int=4 --known-sizeof-long=8
--known-sizeof-long-long=8 --known-sizeof-float=4
--known-sizeof-double=8 --known-sizeof-size_t=8 --known-bits-per-byte=8
--known-sizeof-MPI_Comm=8 --known-sizeof-MPI_Fint=4
--known-mpi-long-double=1 --known-mpi-c-double-complex=0
--download-blacs=1 --download-f-blas-lapack=1 --download-metis=1
--download-parmetis=1 --download-scalapack=1 --download-superlu_dist=1
--known-mpi-shared-libraries=0 --with-64-bit-indices --with-batch=1
--with-debugging=0 --with-mpi-shared=1 PETSC_ARCH=Janus-nodebug-64bit
--download-exodusii=1 --download-hdf5=1 --download-netcdf=1
--known-64-bit-blas-indices
[196]PETSC ERROR:
------------------------------------------------------------------------
[196]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
[180]PETSC ERROR:
------------------------------------------------------------------------
[180]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[180]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[180]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/documentation/faq.html#valgrind[180]PETSC
ERROR: or try http://valgrind.org on GNU/linux and Apple Mac OS X to
find memory corruption errors
[180]PETSC ERROR: configure using --with-debugging=yes, recompile, link,
and run
[180]PETSC ERROR: to get more information on the crash.
[180]PETSC ERROR: --------------------- Error Message
------------------------------------
[180]PETSC ERROR: Signal received!
