There is something wrong with your environment. It is compiling the trivial
program
int main() {
;
return 0;
}
Pushing language C
Popping language C
sh: mpiicc -o /tmp/petsc-cd5uJs/config.setCompilers/conftest
/tmp/petsc-cd5uJs/config.setCompilers/conftest.o
Executing: mpiicc -o /tmp/petsc-cd5uJs/config.setCompilers/conftest
/tmp/petsc-cd5uJs/config.setCompilers/conftest.o
sh:
Executing: /tmp/petsc-cd5uJs/config.setCompilers/conftest
sh: /tmp/petsc-cd5uJs/config.setCompilers/conftest
Executing: /tmp/petsc-cd5uJs/config.setCompilers/conftest
sh:
ERROR while running executable: Could not execute
"/tmp/petsc-cd5uJs/config.setCompilers/conftest":
/tmp/petsc-cd5uJs/config.setCompilers/conftest: error while loading shared
libraries: /apps/compilers/intel_2013/impi/4.1.0.024/intel64/lib/libmpi.so.4:
requires glibc 2.5 or later dynamic linker
but the resulting program cannot be run. Can you compile and run a simple MPI
program on this machine with mpiicc ? Do the following
printf “int main(){ return 0;} > simple.c
mpiicc -o simple simple.c
./simplec
does it work?
On Mar 22, 2014, at 2:24 PM, Qin Lu <[email protected]> wrote:
> I tried what you suggested and got the following error (configure .log
> attached):
> **************
> sh:
> ERROR while running executable: Could not execute
> "/tmp/petsc-cd5uJs/config.setCompilers/conftest":
> /tmp/petsc-cd5uJs/config.setCompilers/conftest: error while loading shared
> libraries: /apps/compilers/intel_2013/impi/4.1.0.024/intel64/lib/libmpi.so.4:
> requires glibc 2.5 or later dynamic linker
> ******************
>
> What can I do about this?
>
> Thanks,
> Qin
>
> From: Barry Smith <[email protected]>
> To: Qin Lu <[email protected]>
> Cc: petsc-users <[email protected]>
> Sent: Saturday, March 22, 2014 11:46 AM
> Subject: Re: [petsc-users] Building PETSc with Intel mpi
>
>
> On Mar 22, 2014, at 10:15 AM, Qin Lu <[email protected]> wrote:
>
> > The Intel mpi's wrappers to Intel compilers are mpiicc and mpiifort (not
> > mpicc and mpif90), can PETSc's configure automatically pick them? Or I have
> > to specify them explicitly (--with-cc=mpiicc --with-fc=mpiifort
> > --with-mpi-compilers=0)?
>
> List
>
> --with-cc=mpiicc --with-fc=mpiifort
>
> do not list --with-mpi-compilers=0 or —with-mpi-dir or —with-mpi-libs
>
> Barry
>
>
>
>
> >
> > Thanks,
> > Qin
> >
> > From: Satish Balay <[email protected]>
> > To: Qin Lu <[email protected]>
> > Cc: Barry Smith <[email protected]>; petsc-users <[email protected]>
> > Sent: Saturday, March 22, 2014 12:09 AM
> > Subject: Re: [petsc-users] Building PETSc with Intel mpi
> >
> > > --with-mpi-dir=/apps/compilers/intel_2013/impi/4.1.0.024/intel64
> > > --with-mpi-compilers=0
> >
> > Does this mpi not come with mpicc/mpif90 wrappers? If they do - its best to
> > use them.
> >
> > If not - its best to look at the docs for this compiler - and specify it
> > with the appropriate
> >
> > --with-mpi-include --with-mpi-lib options, [instead of the above]
> >
> > Satish
> >
> > On Fri, 21 Mar 2014, Qin Lu wrote:
> >
> > > Sourcing the .csh files of the compiler fixed the problem. Thanks!
> > > However, later it got another error (see the attached configure.log for
> > > details):
> > >
> > > *******************************************************************************
> > > UNABLE to CONFIGURE with GIVEN OPTIONS (see configure.log for
> > > details):
> > > -------------------------------------------------------------------------------
> > > Fortran error! mpi_init() could not be located!
> > > *******************************************************************************
> > >
> > > It seems the configure did not link the Intel MPI libs. I used
> > > --with-mpi-dir to specify the MPI directory, can configure get the
> > > correct Intel MPI lib names? If I have to specify the lib names (using
> > > --with-mpi-lib?), which libs should I specify? I saw a lot of libs under
> > > the directory, such as libmpi.a, libmpi_ipl64.a, libmpi_mt.a, etc.
> > >
> > > Thanks a lot,
> > > Qin
> > >
> > >
> > > ________________________________
> > > From: Barry Smith <[email protected]>
> > > To: Qin Lu <[email protected]>
> > > Cc: petsc-users <[email protected]>
> > > Sent: Friday, March 21, 2014 10:11 AM
> > > Subject: Re: [petsc-users] Building PETSc with Intel mpi
> > >
> > >
> > >
> > > Did you follow the directions here:
> > > http://www.mcs.anl.gov/petsc/documentation/faq.html#libimf
> > >
> > > Did it make any difference?
> > >
> > >
> > > On Mar 21, 2014, at 9:45 AM, Qin Lu <[email protected]> wrote:
> > >
> > > > Hello,
> > > >
> > > > I was trying to build PETSc-3.4.2 with Intel MPI using Intel-2013
> > > > compilers in Linux, but got the error below. The configure.log is
> > > > attached.
> > > >
> > > > *******************************************************************************
> > > > UNABLE to EXECUTE BINARIES for ./configure
> > > > -------------------------------------------------------------------------------
> > > > Cannot run executables created with FC. If this machine uses a batch
> > > > system
> > > > to submit jobs you will need to configure using ./configure with the
> > > > additional option --with-batch.
> > > > Otherwise there is problem with the compilers. Can you compile and run
> > > > code with your C/C++ (and maybe Fortran) compilers?
> > > > See http://www.mcs.anl.gov/petsc/documentation/faq.html#libimf
> > > > *******************************************************************************
> > > >
> > > > Thanks a lot for any suggestions abut the problem,
> > > >
> > > > Regards,
> > > > Qin
> > >
> > > >
> > > > <configure.log>
> > >
> >
> >
>
>
> <configure.log>
