>>>>>>>>
Executing: mpif90 -o
/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-2z06LS/config.setCompilers/conftest
/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-2z06LS/config.setCompilers/conftest.o
Testing executable
/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-2z06LS/config.setCompilers/conftest
to see if it can be run
Executing:
/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-2z06LS/config.setCompilers/conftest
Executing:
/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-2z06LS/config.setCompilers/conftest
ERROR while running executable: Could not execute
"/var/folders/sw/67cq0mmx43g93vrb5xkf1j7c0000gn/T/petsc-2z06LS/config.setCompilers/conftest":
dyld: Library not loaded:
/Users/markadams/homebrew/lib/gcc/x86_64-apple-darwin13.4.0/4.9.1/libgfortran.3.dylib
Referenced from: /Users/markadams/homebrew/lib/libmpifort.12.dylib
Reason: image not found
<<<<<<<<<<<
Mostlikely you haven't reinstalled mpich - as its refering to gfortran-4.9.1.
Current gfortran is 5.3
GNU Fortran (Homebrew gcc 5.3.0) 5.3.0
This is what I would do to reinstall brew
1. Make list of pkgs to reinstall
brew leaves > reinstall.lst
2. delete all installed brew pacakges.
brew cleanup
brew list > delete.lst
brew remove `cat delete.lst
3. Now reinstall all required packages
brew update
brew install `cat reinstall.lst`
Satish
On Wed, 13 Jan 2016, Mark Adams wrote:
> I'm still having problems. I have upgraded gcc and mpich. I am now
> upgrading everything from homebrew. Any ideas on this error?
> thanks,
>
> On Wed, Jan 13, 2016 at 2:15 AM, Matthew Knepley <knep...@gmail.com> wrote:
>
> > On Tue, Jan 12, 2016 at 6:31 PM, Satish Balay <ba...@mcs.anl.gov> wrote:
> >
> >> > 'file' object has no attribute 'getvalue' File
> >> "/Users/markadams/Codes/petsc/config/configure.py", line 363, in
> >> petsc_configure
> >>
> >> Hm - have to figure this one out - but the primary issue is:
> >>
> >> > stderr:
> >> > gfortran: warning: couldn't understand kern.osversion '15.2.0
> >> > ld: -rpath can only be used when targeting Mac OS X 10.5 or later
> >>
> >
> > I get this. The remedy I use is to put
> >
> > MACOSX_DEPLOYMENT_TARGET=10.5
> >
> > in the environment. Its annoying, and quintessentially Mac.
> >
> > Matt
> >
> >
> >> Perhaps you've updated xcode or OSX - but did not reinstall brew/gfortran.
> >>
> >> > Executing: mpif90 --version
> >> > stdout:
> >> > GNU Fortran (Homebrew gcc 4.9.1) 4.9.1
> >>
> >> I suggest uninstalling/reinstalling homebrew packages.
> >>
> >> Satish
> >>
> >>
> >>
> >> On Tue, 12 Jan 2016, Mark Adams wrote:
> >>
> >> > I did nuke the arch directory. This has worked in the past and don't
> >> know
> >> > what I might have changed. it's been awhile since I've reconfigured.
> >> > Thanks,
> >> > Mark
> >> >
> >>
> >>
> >
> >
> > --
> > What most experimenters take for granted before they begin their
> > experiments is infinitely more interesting than any results to which their
> > experiments lead.
> > -- Norbert Wiener
> >
>
