Hi ,
I am trying to install Pylith which is a earthquake simulator using Petsc
library, I am building it in PSC bridge cluster, during the steps of building
Petsc, the configuration hanging at
TESTING: configureMPITypes from
config.packages.MPI(config/BuildSystem/config/packages/MPI.py:247)
I am not sure if this has to with the configuration setup of the mpi version I
am using.
Any help would be deeply appreciated.
I am attaching the configure options here:
Saving to: ‘petsc-pylith-2.2.1.tgz’
100%[===========================================================>] 10,415,016
37.3MB/s in 0.3s
2019-05-31 14:03:13 (37.3 MB/s) - ‘petsc-pylith-2.2.1.tgz’ saved
[10415016/10415016]
FINISHED --2019-05-31 14:03:13--
Total wall clock time: 1.1s
Downloaded: 1 files, 9.9M in 0.3s (37.3 MB/s)
/usr/bin/tar -zxf petsc-pylith-2.2.1.tgz
cd petsc-pylith && \
./configure --prefix=/home/xm12345/pylith \
--with-c2html=0 --with-x=0 \
--with-clanguage=C \
--with-mpicompilers=1 \
--with-shared-libraries=1 --with-64-bit-points=1
--with-large-file-io=1 \
--download-chaco=1 --download-ml=1 --download-f2cblaslapack=1
--with-hdf5=1 --with -debugging=0 --with-fc=0
CPPFLAGS="-I/home/xm12345/pylith/include -I/home/xm12345/pylith/include " L
DFLAGS="-L/home/xm12345/pylith/lib -L/home/xm12345/pylith/lib64
-L/home/xm12345/pylith/lib -L/home/xm 12345/pylith/lib64 "
CFLAGS="-g -O2" CXXFLAGS="-g -O2 -DMPICH_IGNORE_CXX_SEEK" FCFLAGS="" \
PETSC_DIR=/home/xm12345/build/pylith/petsc-pylith
PETSC_ARCH=arch-pylith && \
make -f gmakefile -j2 PETSC_DIR=/home/xm12345/build/pylith/petsc-pylith
PETSC_ARCH=arch-pylit h && \
make PETSC_DIR=/home/xm12345/build/pylith/petsc-pylith install && \
make PETSC_DIR=/home/xm12345/build/pylith/petsc-pylith test && \
touch ../installed_petsc
===============================================================================
Configuring PETSc to compile on your system
===============================================================================
===============================================================================
***** WARNING: MAKEFLAGS (set
to w) found in environment variables - ignoring
use ./configure MAKEFLAGS=$MAKEFLAGS if you really want to use
that value ******
===============================================================================
===============================================================================
WARNING! Compiling
PETSc with no debugging, this should
only be done for timing and production runs. All
development should be
done when configured using --with-debugging=1
===============================================================================
TESTING: configureMPITypes from
config.packages.MPI(config/BuildSystem/config/packages/MPI.py:247)
