Satish, Do you have any suggestions for this?
Chris, It may be helpful if you could share the petsc configuration log file with us? Fande, ---------- Forwarded message --------- From: Chris Thompson <thompso...@gmail.com> Date: Tue, Dec 31, 2019 at 9:53 AM Subject: Moose install troubleshooting help To: moose-users <moose-us...@googlegroups.com> Dear All, I could use some help or a pointer in the right direction. I have been following the directions at https://mooseframework.inl.gov/getting_started/installation/hpc_install_moose.html All was going well until "make PETSC_DIR=$STACK_SRC/petsc-3.11.4 PETSC_ARCH=linux-opt install". I tried running "make --debug=v PETSC_DIR=$STACK_SRC/petsc-3.11.4 PETSC_ARCH=linux-opt install", but that didn't produce any more helpful information. This on a CentOS system running 7.6 Here is the error / output I am getting. rogue /usr/local/neapps/moose/stack_temp/petsc-3.11.4 926$ make --debug=v PETSC_DIR=/usr/local/neapps/moose/stack_temp/petsc-3.11.4 PETSC_ARCH=linux-opt install GNU Make 3.82 Built for x86_64-redhat-linux-gnu Copyright (C) 2010 Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html > This is free software: you are free to change and redistribute it. There is NO WARRANTY, to the extent permitted by law. Reading makefiles... Reading makefile `makefile'... Reading makefile `linux-opt/lib/petsc/conf/petscvariables' (search path) (no ~ expansion)... Reading makefile `/usr/local/neapps/moose/stack_temp/petsc-3.11.4/lib/petsc/conf/variables' (search path) (no ~ expansion)... Reading makefile `/usr/local/neapps/moose/stack_temp/petsc-3.11.4/linux-opt/lib/petsc/conf/petscvariables' (search path) (no ~ expansion)... Reading makefile `/usr/local/neapps/moose/stack_temp/petsc-3.11.4/lib/petsc/conf/rules' (search path) (no ~ expansion)... Reading makefile `/usr/local/neapps/moose/stack_temp/petsc-3.11.4/linux-opt/lib/petsc/conf/petscrules' (search path) (no ~ expansion)... Reading makefile `/usr/local/neapps/moose/stack_temp/petsc-3.11.4/lib/petsc/conf/test.common' (search path) (no ~ expansion)... Updating goal targets.... Considering target file `install'. File `install' does not exist. Finished prerequisites of target file `install'. Must remake target `install'. Invoking recipe from makefile:250 to update target `install'. *** Using PETSC_DIR=/usr/local/neapps/moose/stack_temp/petsc-3.11.4 PETSC_ARCH=linux-opt *** *** Installing PETSc at prefix location: /usr/local/neapps/moose/petsc-3.11.4 *** Traceback (most recent call last): File "./config/install.py", line 434, in <module> Installer(sys.argv[1:]).run() File "./config/install.py", line 428, in run self.runcopy() File "./config/install.py", line 407, in runcopy self.installIncludes() File "./config/install.py", line 305, in installIncludes self.copies.extend(self.copytree(self.rootIncludeDir, self.destIncludeDir,exclude = exclude)) File "./config/install.py", line 246, in copytree raise shutil.Error(errors) shutil.Error: ['/usr/local/neapps/moose/stack_temp/petsc-3.11.4/include/petsc', '/usr/local/neapps/moose/petsc-3.11.4/include/petsc', '[\'/usr/local/neapps/moose/stack_temp/petsc-3.11.4/include/petsc/private\', \'/usr/local/neapps/moose/petsc-3.11.4/include/petsc/private\', \'[\\\'/usr/local/neapps/moose/stack_temp/petsc-3.11.4/include/petsc/private/kernels\\\', \\\'/usr/local/neapps/moose/petsc-3.11.4/include/petsc/private/kernels\\\', \\\'[\\\\\\\'/usr/local/neapps/moose/stack_temp/petsc-3.11.4/include/petsc/private/kernels\\\\\\\', \\\\\\\'/usr/local/neapps/moose/petsc-3.11.4/include/petsc/private/kernels\\\\\\\', "[Errno 1] Operation not permitted: \\\\\\\'/usr/local/neapps/moose/petsc-3.11.4/include/petsc/private/kernels\\\\\\\'"]\\\', \\\'/usr/local/neapps/moose/stack_temp/petsc-3.11.4/include/petsc/private\\\', \\\'/usr/local/neapps/moose/petsc-3.11.4/include/petsc/private\\\', "[Errno 1] Operation not permitted: \\\'/usr/local/neapps/moose/petsc-3.11.4/include/petsc/private\\\'"]\', \'/usr/local/neapps/moose/stack_temp/petsc-3.11.4/include/petsc/finclude\', \'/usr/local/neapps/moose/petsc-3.11.4/include/petsc/finclude\', \'[\\\'/usr/local/neapps/moose/stack_temp/petsc-3.11.4/include/petsc/finclude\\\', \\\'/usr/local/neapps/moose/petsc-3.11.4/include/petsc/finclude\\\', "[Errno 1] Operation not permitted: \\\'/usr/local/neapps/moose/petsc-3.11.4/include/petsc/finclude\\\'"]\', \'/usr/local/neapps/moose/stack_temp/petsc-3.11.4/include/petsc\', \'/usr/local/neapps/moose/petsc-3.11.4/include/petsc\', "[Errno 1] Operation not permitted: \'/usr/local/neapps/moose/petsc-3.11.4/include/petsc\'"]', '/usr/local/neapps/moose/stack_temp/petsc-3.11.4/include', '/usr/local/neapps/moose/petsc-3.11.4/include', "[Errno 1] Operation not permitted: '/usr/local/neapps/moose/petsc-3.11.4/include'"] make: *** [install] Error 1 I'm not sure how to proceed with this error. 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