https://gitlab.com/petsc/petsc/-/merge_requests/2494
Will only turn off the hyper batch build if it is a KNL system. Will be added to maint branch Baryr > On Jan 31, 2020, at 11:58 AM, Tomas Mondragon <tom.alex.mondra...@gmail.com> > wrote: > > Hypre problem resolved. PETSc commit 05f86fb made in August 05, 2019 added > the line 'self.installwithbatch = 0' to the __init__ method of the Configure > class in the file petsc/config/BuildSystem/config/packages/hypre.py to fix a > bug with hypre installation on Cray KNL systems. Since the machine I was > installing os was an SGI system, I decided to try switching to > 'self.installwithbatch = 1' and it worked! The configure script was finally > able to run to completion. > > Perhaps there can be a Cray flag for configure that can control this, since > it is only Cray's that have this problem with Hypre? > > For my benefit when I have to do this again - > To get moose/petsc/scripts/update_and_rebuild_petsc.sh to run on an SGI > system as a batch job, I had to: > > Make sure the git (gnu version) module was loaded > git clone moose > cd to the petsc directory and git clone the petsc submodule, but make sure to > pull the latest commit. The commit that the moose repo refers to is outdated. > cd back to the moose directory, git add petsc and git commit so that the > newest petsc commit gets used by the update script. otherwise the old commit > will be used. > download the tarballs for fblaspack, hypre, metis, mumps, parmetis, > scalapack, (PT)scotch, slepc, and superLU_dist. The URLS are in the __init__ > methods of the relevant files inmost/petsc/config/BuildSystem/config/packages/ > alter moose/scripts/update_and_rebuild_petsc.sh script so that it is a > working PBS batch job. Be sure to module swap to the gcc compiler and module > load git (gnu version) and alter the ./configure command arguments > adding > --with-cudac=0 > --with-batch=1 > changing > --download-<package>=/path/to/thirdparty/package/tarball > If the supercomputer is not a Cray KNL system, change line 26 of > moose/petsc/config/BuildSystem/config/packages/hypre.py from > 'self.installwithbath = 0' to 'self.installwithbatch = 1', otherwise, install > hypre on its own and use --with-hypre-dir=/path/to/hypre in the ./configure > command > > On Fri, Jan 31, 2020 at 10:06 AM Tomas Mondragon > <tom.alex.mondra...@gmail.com> wrote: > Thanks for the change to base.py. Pulling the commit, confirm was able to > skip over lgrind and c2html. I did have a problem with Parmetis, but that was > because I was using an old ParMetis commit accidentally. Fixed by downloading > the right commit of ParMetis. > > My current problem is with Hypre. Apparently --download-hypre cannot be used > with --with-batch=1 even if the download URL is on the local machine. The > configuration.log that resulted is attached for anyone who may be interested. > > -- > You received this message because you are subscribed to a topic in the Google > Groups "moose-users" group. > To unsubscribe from this topic, visit > https://groups.google.com/d/topic/moose-users/2xZsBpG-DtY/unsubscribe. > To unsubscribe from this group and all its topics, send an email to > moose-users+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/moose-users/a34fa09e-a4f5-4225-8933-34eb36759260%40googlegroups.com.
