On Thu, 15 Apr 2021, TAY wee-beng wrote: > Hi Satish, > > Sorry, what do you mean by "manually fix up this file"? > > Should I edit the petscvariables file?
yes > > Do I need to rebuild the lib? no After editing the file - run 'make check' Satish > > I guess this problem is related to the new Intel oneAPI if I'm not wrong. No > such problem previously. > > Thank you very much. > > Yours sincerely, > > ================================================ > TAY Wee-Beng 郑伟明 (Zheng Weiming) > Personal research webpage: _http://tayweebeng.wixsite.com/website_ > Youtube research showcase: _https://goo.gl/PtvdwQ_ > linkedin: _https://www.linkedin.com/in/tay-weebeng_ > ================================================ > > On 15/4/2021 9:06 am, Satish Balay wrote: > > C_VERSION = Win32 Development Tool Front End, version 1.11.3 Mon, Feb 27, > > 2017 11:10:38 AM > > \nMicrosoft (R) C/C++ Optimizing Compiler Version 19.16.27045 for x64 > > MPICC_SHOW = Unavailable > > Cxx_VERSION = Win32 Development Tool Front End, version 1.11.3 Mon, Feb 27, > > 2017 11:10:38 AM > > \nMicrosoft (R) C/C++ Optimizing Compiler Version 19.16.27045 for x64 > > MPICXX_SHOW = Unavailable > > FC_VERSION = Win32 Development Tool Front End, version 1.11.3 Mon, Feb 27, > > 2017 11:10:38 AM > > \nIntel(R) Fortran Intel(R) 64 Compiler Classic for applications running on > > Intel(R) 64, Version 2021.2.0 Build 20210228_000000 > > <<<< > > > > I'm not sure what happened here. You might want to just manually fix up this > > file > > > > C_VERSION = Win32 Development Tool Front End, version 1.11.3 Mon, Feb 27, > > 2017 11:10:38 AM\nMicrosoft (R) C/C++ Optimizing Compiler Version > > 19.16.27045 for x64 > > MPICC_SHOW = Unavailable > > Cxx_VERSION = Win32 Development Tool Front End, version 1.11.3 Mon, Feb 27, > > 2017 11:10:38 AM\nMicrosoft (R) C/C++ Optimizing Compiler Version > > 19.16.27045 for x64 > > MPICXX_SHOW = Unavailable > > FC_VERSION = Win32 Development Tool Front End, version 1.11.3 Mon, Feb 27, > > 2017 11:10:38 AM\nIntel(R) Fortran Intel(R) 64 Compiler Classic for > > applications running on Intel(R) 64, Version 2021.2.0 Build 20210228_000000 > > > > Satish > > > > On Thu, 15 Apr 2021, TAY wee-beng wrote: > > > >> Hi all, > >> > >> I have attached the req file > >> > >> Thank you very much. > >> > >> Yours sincerely, > >> > >> ================================================ > >> TAY Wee-Beng 郑伟明 (Zheng Weiming) > >> Personal research webpage: _http://tayweebeng.wixsite.com/website_ > >> Youtube research showcase: _https://goo.gl/PtvdwQ_ > >> linkedin: _https://www.linkedin.com/in/tay-weebeng_ > >> ================================================ > >> > >> On 14/4/2021 11:55 pm, Satish Balay wrote: > >>> Please send the file > >>> /cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017//lib/petsc/conf/petscvariables > >>> > >>> Satish > >>> > >>> On Wed, 14 Apr 2021, TAY wee-beng wrote: > >>> > >>>> Hi, > >>>> > >>>> I redo the installation: > >>>> > >>>> /*Now to install the libraries do:*//* > >>>> *//*make PETSC_DIR=/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0 > >>>> PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017 install*//* > >>>> *//*=========================================*//* > >>>> *//* > >>>> *//*DELL-T7610+wtay@DELL-T7610 > >>>> /cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0*//* > >>>> *//*$ make PETSC_DIR=/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0 > >>>> PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017 install*//* > >>>> *//**** Using > >>>> PETSC_DIR=/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0 > >>>> PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017 ****//* > >>>> *//**** Installing PETSc at prefix location: > >>>> /cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017 ****//* > >>>> *//*====================================*//* > >>>> *//*Install complete.*//* > >>>> *//*Now to check if the libraries are working do (in current > >>>> directory):*//* > >>>> *//*make PETSC_DIR=/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017 > >>>> PETSC_ARCH="" check*//* > >>>> *//*====================================*//* > >>>> *//*/usr/bin/make --no-print-directory -f makefile > >>>> PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017 > >>>> PETSC_DIR=/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0 > >>>> mpi4py-install > >>>> petsc4py-install libmesh-install mfem-insta*//* > >>>> *//*ll slepc-install hpddm-install amrex-install bamg-install*//* > >>>> *//*make[2]: Nothing to be done for 'mpi4py-install'.*//* > >>>> *//*make[2]: Nothing to be done for 'petsc4py-install'.*//* > >>>> *//*make[2]: Nothing to be done for 'libmesh-install'.*//* > >>>> *//*make[2]: Nothing to be done for 'mfem-install'.*//* > >>>> *//*make[2]: Nothing to be done for 'slepc-install'.*//* > >>>> *//*make[2]: Nothing to be done for 'hpddm-install'.*//* > >>>> *//*make[2]: Nothing to be done for 'amrex-install'.*//* > >>>> *//*make[2]: Nothing to be done for 'bamg-install'.*//* > >>>> */ > >>>> DELL-T7610+wtay@DELL-T7610 > >>>> /cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0 > >>>> > >>>> I ran the check: > >>>> > >>>> /*$ make PETSC_DIR=/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017 > >>>> PETSC_ARCH="" check*//* > >>>> *//*/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017//lib/petsc/conf/petscvariables:5: > >>>> *** missing separator. Stop.*/ > >>>> > >>>> Why is this happening? > >>>> > >>>> Thank you very much. > >>>> > >>>> Yours sincerely, > >>>> > >>>> ================================================ > >>>> TAY Wee-Beng 郑伟明 (Zheng Weiming) > >>>> Personal research webpage: _http://tayweebeng.wixsite.com/website_ > >>>> Youtube research showcase: _https://goo.gl/PtvdwQ_ > >>>> linkedin: _https://www.linkedin.com/in/tay-weebeng_ > >>>> ================================================ > >>>> > >>>> On 14/4/2021 6:01 pm, Mark Adams wrote: > >>>>> You have PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017 > >>>>> I think you use PETSC_ARCH="" for installed libs. > >>>>> When you do the install it will tell you exactly what to run to run > >>>>> "check". > >>>>> You might double check that . > >>>>> Mark > >>>>> > >>>>> On Wed, Apr 14, 2021 at 4:10 AM TAY wee-beng <zon...@gmail.com > >>>>> <mailto:zon...@gmail.com>> wrote: > >>>>> > >>>>> Hi Barry, > >>>>> > >>>>> Ops, which dir should I run /*export PETSC_DIR=`pwd`*//* > >>>>> */ > >>>>> > >>>>> Maybe I ran it wrongly initially at where the lib is stored: > >>>>> /*/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/*//* > >>>>> */ > >>>>> > >>>>> My source is at > >>>>> > >>>>> /*/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0*/ > >>>>> > >>>>> Now I ran: > >>>>> > >>>>> /*export PETSC_DIR=`pwd`*//* > >>>>> *//*cd src/ksp/ksp/tutorials/*//* > >>>>> *//*make ex2f*/ > >>>>> > >>>>> > >>>>> /*/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/lib/petsc/bin/win32fe/win32fe > >>>>> ifort -MD -Z7 -fpp -MD -Z7 -fpp > >>>>> -I/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/include > >>>>> -I/cygdrive/d/wtay/Downloads/S*//* > >>>>> > >>>>> *//*ource_codes/petsc-3.15.0/petsc-3.15.0_win64_impi_vs2017/include > >>>>> -I/cygdrive/c/Program\ Files\ > >>>>> \(x86\)/Intel/oneAPI/mpi/latest/include ex2f.F90 > >>>>> > >>>>> -R/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/petsc-3.*//* > >>>>> *//*15.0_win64_impi_vs2017/lib > >>>>> > >>>>> -L/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/petsc-3.15.0_win64_impi_vs2017/lib > >>>>> -R/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/lib > >>>>> -L/cygdrive/d/Lib/petsc-3.15.0_win64_impi*//* > >>>>> *//*_vs2017/lib -lpetsc -lflapack -lfblas /cygdrive/c/Program\ > >>>>> Files\ \(x86\)/Intel/oneAPI/mpi/latest/lib/debug/impi.lib > >>>>> /cygdrive/c/Program\ Files\ > >>>>> \(x86\)/Intel/oneAPI/mpi/latest/lib/debug/impicxx.lib > >>>>> /cygdrive/c/*//* > >>>>> *//*Program\ Files\ > >>>>> \(x86\)/Intel/oneAPI/mpi/latest/lib/libmpi_ilp64.lib Gdi32.lib > >>>>> User32.lib Advapi32.lib Kernel32.lib Ws2_32.lib -o ex2f*//* > >>>>> *//*ifort: command line warning #10006: ignoring unknown option > >>>>> > >>>>> '/R/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/petsc-3.15.0_win64_impi_vs2017/lib'*//* > >>>>> *//*ifort: command line warning #10006: ignoring unknown option > >>>>> '/R/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/lib'*//* > >>>>> *//*ex2f.F90(80): error #6405: The same named entity from > >>>>> different modules and/or program units cannot be referenced. > >>>>> [PETSC_COMM_WORLD]*//* > >>>>> *//* call MPI_Comm_rank(PETSC_COMM_WORLD,rank,ierr)*//* > >>>>> *//*-------------------------^*//* > >>>>> *//*ex2f.F90(80): error #7112: This actual argument must not be > >>>>> the name of a procedure. [PETSC_COMM_WORLD]*//* > >>>>> *//* call MPI_Comm_rank(PETSC_COMM_WORLD,rank,ierr)*//* > >>>>> *//*-------------------------^*//* > >>>>> *//*ex2f.F90(81): error #6405: The same named entity from > >>>>> different modules and/or program units cannot be referenced. > >>>>> [PETSC_COMM_WORLD]*//* > >>>>> *//* call MPI_Comm_size(PETSC_COMM_WORLD,size,ierr)*//* > >>>>> *//*-------------------------^*//* > >>>>> *//*ex2f.F90(81): error #7112: This actual argument must not be > >>>>> the name of a procedure. [PETSC_COMM_WORLD]*//* > >>>>> *//* call MPI_Comm_size(PETSC_COMM_WORLD,size,ierr)*//* > >>>>> *//*-------------------------^*//* > >>>>> *//*ex2f.F90(93): error #6405: The same named entity from > >>>>> different modules and/or program units cannot be referenced. > >>>>> [PETSC_COMM_WORLD]*//* > >>>>> *//* call MatCreate(PETSC_COMM_WORLD,A,ierr)*//* > >>>>> *//*---------------------^*//* > >>>>> *//*ex2f.F90(93): error #7112: This actual argument must not be > >>>>> the name of a procedure. [PETSC_COMM_WORLD]*//* > >>>>> *//* call MatCreate(PETSC_COMM_WORLD,A,ierr)*//* > >>>>> *//*---------------------^*//* > >>>>> *//*ex2f.F90(159): error #6405: The same named entity from > >>>>> different modules and/or program units cannot be referenced. > >>>>> [PETSC_COMM_WORLD]*//* > >>>>> *//* call > >>>>> VecCreateMPI(PETSC_COMM_WORLD,PETSC_DECIDE,m*n,u,ierr)*//* > >>>>> *//*------------------------^*//* > >>>>> *//*ex2f.F90(159): error #7112: This actual argument must not be > >>>>> the name of a procedure. [PETSC_COMM_WORLD]*//* > >>>>> *//* call > >>>>> VecCreateMPI(PETSC_COMM_WORLD,PETSC_DECIDE,m*n,u,ierr)*//* > >>>>> *//*------------------------^*//* > >>>>> *//*ex2f.F90(171): error #6405: The same named entity from > >>>>> different modules and/or program units cannot be referenced. > >>>>> [PETSC_COMM_WORLD]*//* > >>>>> *//* call > >>>>> PetscRandomCreate(PETSC_COMM_WORLD,rctx,ierr)*//* > >>>>> *//*--------------------------------^*//* > >>>>> *//*ex2f.F90(171): error #7112: This actual argument must not be > >>>>> the name of a procedure. [PETSC_COMM_WORLD]*//* > >>>>> *//* call > >>>>> PetscRandomCreate(PETSC_COMM_WORLD,rctx,ierr)*//* > >>>>> *//*--------------------------------^*//* > >>>>> *//*ex2f.F90(193): error #6405: The same named entity from > >>>>> different modules and/or program units cannot be referenced. > >>>>> [PETSC_COMM_WORLD]*//* > >>>>> *//* call KSPCreate(PETSC_COMM_WORLD,ksp,ierr)*//* > >>>>> *//*---------------------^*//* > >>>>> *//*ex2f.F90(193): error #7112: This actual argument must not be > >>>>> the name of a procedure. [PETSC_COMM_WORLD]*//* > >>>>> *//* call KSPCreate(PETSC_COMM_WORLD,ksp,ierr)*//* > >>>>> *//*---------------------^*//* > >>>>> *//*ex2f.F90(319): error #6405: The same named entity from > >>>>> different modules and/or program units cannot be referenced. > >>>>> [PETSC_COMM_WORLD]*//* > >>>>> *//* call MPI_Comm_rank(PETSC_COMM_WORLD,rank,ierr)*//* > >>>>> *//*-------------------------^*//* > >>>>> *//*ex2f.F90(319): error #7112: This actual argument must not be > >>>>> the name of a procedure. [PETSC_COMM_WORLD]*//* > >>>>> *//* call MPI_Comm_rank(PETSC_COMM_WORLD,rank,ierr)*//* > >>>>> *//*-------------------------^*//* > >>>>> *//*compilation aborted for ex2f.F90 (code 1)*//* > >>>>> *//*make: *** > >>>>> > >>>>> [/cygdrive/d/wtay/Downloads/Source_codes/petsc-3.15.0/lib/petsc/conf/test:23: > >>>>> ex2f] Error 1*/ > >>>>> > >>>>> > >>>>> I have also attached the "/*make check*/" output. Seems like > >>>>> there's problem with fortran compile. > >>>>> > >>>>> Thank you very much. > >>>>> > >>>>> Yours sincerely, > >>>>> > >>>>> ================================================ > >>>>> TAY Wee-Beng 郑伟明 (Zheng Weiming) > >>>>> Personal research webpage: _http://tayweebeng.wixsite.com/website > >>>>> <http://tayweebeng.wixsite.com/website>_ > >>>>> Youtube research showcase: _https://goo.gl/PtvdwQ > >>>>> <https://goo.gl/PtvdwQ>_ > >>>>> linkedin: _https://www.linkedin.com/in/tay-weebeng > >>>>> <https://www.linkedin.com/in/tay-weebeng>_ > >>>>> ================================================ > >>>>> > >>>>> On 14/4/2021 3:47 pm, Barry Smith wrote: > >>>>>> Please send configure.log and make.log and the results of "make > >>>>>> check" so we have the details on the build process. > >>>>>> > >>>>>>> /*No rule to make target > >>>>>>> > >>>>>>> '/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/share/petsc/examples/src/ksp/ksp/tutori*//*als/lib/petsc/conf/test'. > >>>>>>> Stop.*/ > >>>>>>> > >>>>>> Looks funny; it does not seem to separate the PETSc directory > >>>>>> from its configuration directory appropriately. > >>>>>> > >>>>>> Are you sure > >>>>>> > >>>>>>> /*export PETSC_DIR=`pwd`*//* > >>>>>>> *//*export PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017*/ > >>>>>>> > >>>>>> are run in the appropriate directory so that PETSC_DIR is > >>>>>> correct. > >>>>>> > >>>>>> Barry > >>>>>> > >>>>>> > >>>>>> > >>>>>> > >>>>>> > >>>>>> > >>>>>>> On Apr 14, 2021, at 2:20 AM, TAY wee-beng <zon...@gmail.com > >>>>>>> <mailto:zon...@gmail.com>> wrote: > >>>>>>> > >>>>>>> Hi Mark, > >>>>>>> > >>>>>>> I'm not sure what's wrong. > >>>>>>> > >>>>>>> In VS2017 + Intel oneAPI, > >>>>>>> > >>>>>>> even after adding the full path: > >>>>>>> > >>>>>>> #include > >>>>>>> > >>>>>>> <D:/Lib/petsc-3.15.0_win64_impi_vs2017/include/petsc/finclude/petscksp.h> > >>>>>>> > >>>>>>> I got a new error: > >>>>>>> > >>>>>>> /*Compiling with Intel® Fortran Compiler Classic 2021.2.0 > >>>>>>> [Intel(R) 64]...*//* > >>>>>>> *//*ex2f.F90*//* > >>>>>>> *//*petscksp.h(8): #error: can't find include file: > >>>>>>> petsc/finclude/petscpc.h*//* > >>>>>>> *//*ex2f : error PRJ0019: A tool returned an error code*/ > >>>>>>> > >>>>>>> Note that I have also specified the include dir in the > >>>>>>> properties: > >>>>>>> > >>>>>>> > >>>>>>> /*Debug/;$(PETSC_DIR);$(PETSC_DIR)/include;$(I_MPI_ONEAPI_ROOT)/include*/ > >>>>>>> > >>>>>>> I also tried in cygwin: > >>>>>>> > >>>>>>> /*export PETSC_DIR=`pwd`*//* > >>>>>>> *//*export PETSC_ARCH=petsc-3.15.0_win64_impi_vs2017*//* > >>>>>>> *//*make ex2f*/ > >>>>>>> > >>>>>>> I got the error: > >>>>>>> > >>>>>>> /*$ make ex2f*//* > >>>>>>> *//*makefile:41: > >>>>>>> > >>>>>>> /cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/share/petsc/examples/src/ksp/ksp/tutorials/lib/petsc/conf/te*//*st: > >>>>>>> No such file or directory*//* > >>>>>>> *//*make: *** No rule to make target > >>>>>>> > >>>>>>> '/cygdrive/d/Lib/petsc-3.15.0_win64_impi_vs2017/share/petsc/examples/src/ksp/ksp/tutori*//*als/lib/petsc/conf/test'. > >>>>>>> Stop.*/ > >>>>>>> > >>>>>>> Somehow it just doesn't work. Building the library has no > >>>>>>> problem though. > >>>>>>> > >>>>>>> I wonder what's wrong. > >>>>>>> > >>>>>>> > >>>>>>> Thank you very much. > >>>>>>> > >>>>>>> Yours sincerely, > >>>>>>> > >>>>>>> ================================================ > >>>>>>> TAY Wee-Beng 郑伟明 (Zheng Weiming) > >>>>>>> Personal research webpage: > >>>>>>> _http://tayweebeng.wixsite.com/website > >>>>>>> <http://tayweebeng.wixsite.com/website>_ > >>>>>>> Youtube research showcase: _https://goo.gl/PtvdwQ > >>>>>>> <https://goo.gl/PtvdwQ>_ > >>>>>>> linkedin: _https://www.linkedin.com/in/tay-weebeng > >>>>>>> <https://www.linkedin.com/in/tay-weebeng>_ > >>>>>>> ================================================ > >>>>>>> > >>>>>>> On 14/4/2021 9:31 am, Mark Adams wrote: > >>>>>>>> PETSc has changed Fortran syntax since v3.9. You should > >>>>>>>> upgrade. Look at examples for how to use modules etc. > >>>>>>>> > >>>>>>>> > >>>>>>>> /*Compiling with Intel® Fortran Compiler Classic 2021.2.0 > >>>>>>>> [Intel(R) 64]...*//* > >>>>>>>> *//*global.F90*//* > >>>>>>>> *//*global.F90(3): #error: can't find include file: > >>>>>>>> petsc/finclude/petsc.h*//* > >>>>>>>> *//*global.F90(937): #error: can't find include file: > >>>>>>>> petsc/finclude/petsc.h*/ > >>>>>>>> > >>>>>>>> > >>>>>>>> It looks like you might not have your PETSC_ARCH variable set. > >>>>>>>> You should get a full path to /finclude/petsc.h. Look at the > >>>>>>>> compile line. > >>>>>>>> > >>>>>>>> There are PETSc examples that you you can make to see an > >>>>>>>> example of a correct make. For example, > >>>>>>>> > cd petsc/src/ksp/ksp/tutorials > >>>>>>>> > > > > > > > > make ex2f > >>>>>>>> > >>>>>>>> should make an executable and you can look at the compile and > >>>>>>>> link lines, and compare to what you are using. > >>>>>>>> > >>>>>>>> Mark > >>>>>>>> > >>>>>>>> > >>>>>>>> -- > >>>>>>>> > >>>>>>>> Thank you very much. > >>>>>>>> > >>>>>>>> Yours sincerely, > >>>>>>>> > >>>>>>>> ================================================ > >>>>>>>> TAY Wee-Beng 郑伟明 (Zheng Weiming) > >>>>>>>> Personal research webpage: > >>>>>>>> _http://tayweebeng.wixsite.com/website > >>>>>>>> <http://tayweebeng.wixsite.com/website>_ > >>>>>>>> Youtube research showcase: _https://goo.gl/PtvdwQ > >>>>>>>> <https://goo.gl/PtvdwQ>_ > >>>>>>>> linkedin: _https://www.linkedin.com/in/tay-weebeng > >>>>>>>> <https://www.linkedin.com/in/tay-weebeng>_ > >>>>>>>> ================================================ > >>>>>>>> > >
