Hi Pierre,
I have tried to exclude Conda related environment variables but it does not work. Instead, if I include ‘--download-hdf5=yes’ but exclude ‘--with-hdf5-fortran-bindings’ in the configuration, PETSc can be configured and installed without problem, even with Conda related environment activated. However, since my code requires fortran interface to HDF5, I do need ‘--with-hdf5-fortran-bindings’, otherwise, my code cannot be compiled. Any other suggestions? Thanks, Danyang From: Pierre Jolivet <pie...@joliv.et> Date: Friday, January 6, 2023 at 7:59 AM To: Danyang Su <danyang...@gmail.com> Cc: <petsc-users@mcs.anl.gov> Subject: Re: [petsc-users] Error running configure on HDF5 in PETSc-3.18.3 On 6 Jan 2023, at 4:49 PM, Danyang Su <danyang...@gmail.com> wrote: Hi All, I get ‘Error running configure on HDF5’ in PETSc-3.18.3 on MacOS, but no problem on Ubuntu. Attached is the configuration log file. ./configure --with-cc=gcc --with-cxx=g++ --with-fc=gfortran --download-mumps --download-scalapack --download-parmetis --download-metis --download-ptscotch --download-fblaslapack --download-mpich --download-hypre --download-superlu_dist --download-hdf5=yes --with-debugging=0 --download-cmake --with-hdf5-fortran-bindings Any idea on this? Could you try to reconfigure in a shell without conda being activated? You have PATH=/Users/danyangsu/Soft/Anaconda3/bin:/Users/danyangsu/Soft/Anaconda3/condabin:[…] which typically results in a broken configuration. Thanks, Pierre Thanks, Danyang
