Do you need C++, you can configure --with-cxx=0 if you do not need it. You can also try the main branch of PETSc or slightly different versions of the compiler.
Barry > On Jul 19, 2023, at 4:31 PM, Robert Crockett via petsc-users > <petsc-users@mcs.anl.gov> wrote: > > Hello, > I am attempting to build PETSc using the 2018.5.274 Intel compiler suite on > CentOS7. I get the below error messages. > See the attached for more information. > The file petscbuild.sh is the script used to configure and build > The file configure.log is output by PETSc > The file log.petscbuild is the output of the config & build script. > > Can you please help find a work-around? > Best, > Robert > > PS. Some related links I found in searching on this issue. > The first references a related compiler bug ticket opened with Intel, though > I cannot tell if it was closed or if it applied to my compiler. > https://community.intel.com/t5/Intel-C-Compiler/Default-constructor-of-variant-is-deleted/m-p/1156212?profile.language=en > https://mediatum.ub.tum.de/doc/1555265/1555265.pdf > > Robert Crockett > Plasma Simulation Engineer | OCTO - Computational Products > P: 617.648.8349 M: 415.205.4567 > > LAM RESEARCH > 4650 Cushing Pkwy, Fremont CA 94538 USA > lamresearch.com <https://www.lamresearch.com/> > <image001.png> > > ----------------------------------------- > Using C compile: /usr/local/petsc/r/bin/mpicc -o .o -c -wd1572 > -Wno-unknown-pragmas -O3 -mtune=generic > mpicc -show: icc -fPIC -wd1572 -O3 -mtune=generic > -I/usr/local/petsc/r/include -L/usr/local/petsc/r/lib -Wl,-rpath > -Wl,/usr/local/petsc/r/lib -Wl,--enable-new-dtags -lmpi > C compiler version: icc (ICC) 18.0.5 20180823 > Using C++ compile: /usr/local/petsc/r/bin/mpicxx -o .o -c -wd1572 -O3 > -mtune=generic -std=c++14 -I/usr/local/share/petsc/src/include > -I/usr/local/share/petsc/src/arch-linux-c-opt/include > -I/usr/local/petsc/r/include > mpicxx -show: icpc -wd1572 -O3 -mtune=generic -std=c++14 -fPIC > -I/usr/local/petsc/r/include -L/usr/local/petsc/r/lib -lmpicxx -Wl,-rpath > -Wl,/usr/local/petsc/r/lib -Wl,--enable-new-dtags -lmpi > C++ compiler version: icpc (ICC) 18.0.5 20180823 > Using Fortran compile: /usr/local/petsc/r/bin/mpif90 -o .o -c -Wall > -ffree-line-length-none -ffree-line-length-0 -Wno-lto-type-mismatch > -Wno-unused-dummy-argument -O3 -mtune=generic > -I/usr/local/share/petsc/src/include > -I/usr/local/share/petsc/src/arch-linux-c-opt/include > -I/usr/local/petsc/r/include > mpif90 -show: gfortran -fPIC -ffree-line-length-none -ffree-line-length-0 > -Wno-lto-type-mismatch -O3 -mtune=generic -I/usr/local/petsc/r/include > -I/usr/local/petsc/r/include -L/usr/local/petsc/r/lib -lmpifort -Wl,-rpath > -Wl,/usr/local/petsc/r/lib -Wl,--enable-new-dtags -lmpi > Fortran compiler version: GNU Fortran (GCC) 7.3.1 20180303 (Red Hat 7.3.1-5) > ----------------------------------------- > Using C/C++ linker: /usr/local/petsc/r/bin/mpicc > Using C/C++ flags: -wd1572 -Wno-unknown-pragmas -O3 -mtune=generic > Using Fortran linker: /usr/local/petsc/r/bin/mpif90 > Using Fortran flags: -Wall -ffree-line-length-none -ffree-line-length-0 > -Wno-lto-type-mismatch -Wno-unused-dummy-argument -O3 -mtune=generic > ----------------------------------------- > Using system modules: > Using mpi.h: # 1 "/usr/local/petsc/r/include/mpi.h" 1 > ----------------------------------------- > Using libraries: -Wl,-rpath,/usr/local/share/petsc/src/arch-linux-c-opt/lib > -L/usr/local/share/petsc/src/arch-linux-c-opt/lib > -Wl,-rpath,/usr/local/petsc/r/lib -L/usr/local/petsc/r/lib > -Wl,-rpath,/opt/rh/devtoolset-7/root/usr/lib/gcc/x86_64-redhat-linux/7 > -L/opt/rh/devtoolset-7/root/usr/lib/gcc/x86_64-redhat-linux/7 > -Wl,-rpath,/opt/rh/devtoolset-7/root/usr/lib64 > -L/opt/rh/devtoolset-7/root/usr/lib64 > -Wl,-rpath,/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 > > -L/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/ipp/lib/intel64 > > -Wl,-rpath,/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin > > -L/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/compiler/lib/intel64_lin > > -Wl,-rpath,/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64_lin > > -L/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/mkl/lib/intel64_lin > > -Wl,-rpath,/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 > > -L/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64/gcc4.7 > > -Wl,-rpath,/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/daal/lib/intel64_lin > > -L/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/daal/lib/intel64_lin > > -Wl,-rpath,/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64_lin/gcc4.4 > > -L/work/tools/intel/composer_xe_2018_4/compilers_and_libraries_2018.5.274/linux/tbb/lib/intel64_lin/gcc4.4 > -Wl,-rpath,/opt/rh/devtoolset-7/root/usr/lib > -L/opt/rh/devtoolset-7/root/usr/lib -lpetsc -lspqr -lumfpack -lklu -lcholmod > -lbtf -lccolamd -lcolamd -lcamd -lamd -lsuitesparseconfig -lscalapack > -lsuperlu -lf2clapack -lf2cblas -lptesmumps -lptscotchparmetisv3 -lptscotch > -lptscotcherr -lesmumps -lscotch -lscotcherr -lpthread -lmetis -ldl -lmpifort > -lmpi -lgfortran -lm -lgfortran -lm -lgcc_s -lquadmath -ldl -lmpicxx -lmpi > -limf -lsvml -lirng -lstdc++ -lm -lipgo -ldecimal -lcilkrts -lgcc_s -lirc > -lirc_s -lrt -ldl -lmpicxx -lmpi -limf -lsvml -lirng -lstdc++ -lm -lipgo > -ldecimal -lcilkrts -lgcc_s -lirc -lirc_s -ldl > ------------------------------------------ > Using mpiexec: /usr/local/petsc/r/bin/mpiexec > ------------------------------------------ > Using MAKE: /usr/bin/gmake > Default MAKEFLAGS: MAKE_NP:4 MAKE_LOAD:6.0 MAKEFLAGS: --no-print-directory -- > PETSC_ARCH=arch-linux-c-opt PETSC_DIR=/usr/local/share/petsc/src > ========================================== > /usr/bin/gmake --print-directory -f gmakefile -j4 -l6.0 V= libs > /opt/mambaforge/bin/python3 ./config/gmakegen.py --petsc-arch=arch-linux-c-opt > CXX arch-linux-c-opt/obj/sys/objects/device/impls/host/hostcontext.o > CXX arch-linux-c-opt/obj/sys/objects/device/impls/host/hostdevice.o > CXX arch-linux-c-opt/obj/sys/objects/device/interface/dcontext.o > CXX arch-linux-c-opt/obj/sys/objects/device/interface/device.o > CXX > arch-linux-c-opt/obj/sys/objects/device/interface/global_dcontext.o > CXX arch-linux-c-opt/obj/sys/objects/device/interface/mark_dcontext.o > /usr/local/share/petsc/src/include/petsc/private/cpp/object_pool.hpp(930): > error: the default constructor of > "Petsc::util::compressed_pair<PetscDeviceContextConstructor, > Petsc::memory::PoolAllocator>" cannot be referenced -- it is a deleted > function > util::compressed_pair<constructor_type, allocator_type> pair_{}; > ^ > detected during instantiation of class "Petsc::ObjectPool<T, > Constructor> [with T=_p_PetscDeviceContext, > Constructor=PetscDeviceContextConstructor]" at line 61 of > "/usr/local/share/petsc/src/src/sys/objects/device/interface/dcontext.cxx" > > CXX arch-linux-c-opt/obj/sys/objects/device/interface/memory.o > compilation aborted for > /usr/local/share/petsc/src/src/sys/objects/device/interface/dcontext.cxx > (code 2) > gmake[3]: *** [arch-linux-c-opt/obj/sys/objects/device/interface/dcontext.o] > Error 2 > gmake[3]: *** Waiting for unfinished jobs.... > /usr/local/share/petsc/src/include/petsc/private/cpp/object_pool.hpp(930): > error: the default constructor of > "Petsc::util::compressed_pair<PetscEventConstructor, > Petsc::memory::PoolAllocator>" cannot be referenced -- it is a deleted > function > util::compressed_pair<constructor_type, allocator_type> pair_{}; > ^ > detected during instantiation of class "Petsc::ObjectPool<T, > Constructor> [with T=_n_PetscEvent, Constructor=PetscEventConstructor]" at > line 54 of > "/usr/local/share/petsc/src/src/sys/objects/device/interface/mark_dcontext.cxx" > > compilation aborted for > /usr/local/share/petsc/src/src/sys/objects/device/interface/mark_dcontext.cxx > (code 2) > gmake[3]: *** > [arch-linux-c-opt/obj/sys/objects/device/interface/mark_dcontext.o] Error 2 > gmake[2]: *** [libs] Error 2 > **************************ERROR************************************* > Error during compile, check arch-linux-c-opt/lib/petsc/conf/make.log > Send it and arch-linux-c-opt/lib/petsc/conf/configure.log to > petsc-ma...@mcs.anl.gov <mailto:petsc-ma...@mcs.anl.gov> > ******************************************************************** > make[1]: *** [all] Error 1 > make: *** [all] Error 2 > *** Using PETSC_DIR=/usr/local/share/petsc/src PETSC_ARCH=arch-linux-c-opt *** > *** Installing PETSc at prefix location: /usr/local/petsc/r *** > ==================================== > Install complete. > > > LAM RESEARCH CONFIDENTIALITY NOTICE: This e-mail transmission, and any > documents, files, or previous e-mail messages attached to it, (collectively, > "E-mail Transmission") may be subject to one or more of the following based > on the associated sensitivity level: E-mail Transmission (i) contains > confidential information, (ii) is prohibited from distribution outside of > Lam, and/or (iii) is intended solely for and restricted to the specified > recipient(s). If you are not the intended recipient, or a person responsible > for delivering it to the intended recipient, you are hereby notified that any > disclosure, copying, distribution or use of any of the information contained > in or attached to this message is STRICTLY PROHIBITED. If you have received > this transmission in error, please immediately notify the sender and destroy > the original transmission and its attachments without reading them or saving > them to disk. Thank you. > > Confidential – Limited Access and Use > > <configure.log><log.petscbuild><petscbuild.sh>
