Shell Shortcuts could be used to implement symlink like behaviour, and 
it would be compatible on more systems, but it would be a bigger pain to 
implement in PHP.

As far as the directory junctions, this is how MS describes them:

# NTFS Directory Junctions. These are NTFS directories that can be 
resolved to any local namespace. Directory junctions provide a very 
powerful tool for system administrators, but are not generally 
deployed—they can only be created with the Linkd.exe tool in the Windows 
2000 Resource Kit. Because NTFS directory junctions can be used to make 
the storage namespace span volumes, they may present new subtleties for 
application developers.

A key phrase here, 'local namespace'.  Basicly, they ARE symlinks for 
directories.

http://www.winnetmag.com/Articles/Index.cfm?ArticleID=8321
http://www.microsoft.com/windows2000/techinfo/howitworks/fileandprint/stordev.asp
http://www.sysinternals.com/ntw2k/source/misc.shtml#junction

And if someone was really wanting symlinks for files, Reparse Points 
could be used to implement a file system filter that implements them.

Shane


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