Hi, On Wed, Nov 25, 2009 at 02:54:08PM -0700, Jesse Brown wrote: > Hi all, > > I'm using pynifti's NiftiImage to write a nifti file from a NumPy array. I > am able to write nifti files fine from ndarrays ordered z,y,x. The problem > is, when I display them in fslview, they're offset on the x axis - the brain > is split in half (when displayed with the MNI152 standard space brain). This > happens whether I write the array without any header updating or if I match > the headers between the image I'm creating and the MNI152 standard space > image using UpdateFromDict. My best guess is that something with the sform > is off but I'm not certain. Any suggestions?
Are you running that on Windows by any chance? If that is the case: Are your writing compressed files? If the is the case: Try uncompressed ones. Otherwise, could you send a screenshot of what is going on, and maybe a dump of the header of the broken nifti file? Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://mih.voxindeserto.de _______________________________________________ Pkg-ExpPsy-PyMVPA mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/pkg-exppsy-pymvpa
