On Mon, Jan 11, 2010 at 09:39:31AM -0500, Per B. Sederberg wrote: > On Mon, Jan 11, 2010 at 9:31 AM, Michael Hanke <[email protected]> > wrote: > > The problem was RPy1 -- they didn't play nicely together. Once I removed > > RPy1, things were fine. > > > > Strange. I think it's something about 64-bit, too. Tests for rpy and > rpy2 dependent classifiers all run without a problem on my laptop, > which is 32-bit and has both rpy and rpy2, but I just tested on my > 64-bit desktop and got the same error you did.
I did that on my laptop, which is 32bit as well... > > Given that all of the code to test for rpy and rpy2 run from ipython, > I'm really thinking this is an error in the exists method. There's a > part in there that I don't understand about rpy dependency checking, > so I couldn't do the same for rpy2. Did you write that? Nope, Yarik did. > > That raises the question, what we should do with the RPy1 dependent > > code? Per, could you port ithe rest to RPy2 as well (possibly removing > > ENET, if > > it is fully replaced by GLMNET now)? > > > > GLMNET actually replaces both ENET and LARS and does it faster than > both, so I think we should just end up removing both the others. I'll > try and write an example to go into the docs that does all three with > GLMNET. > > If someone can voice a reason to keep LARS and ENET, then I'm happy to > port them, too. I vote for removal unless a valid reason pops up. > > Sidenote: If refactored the glmnet tests a bit and included them into > > the main battery. That revealed a few problems that I am addressing > > right now -- will push what I have now nevertheless and push the fixes > > later on. > > Sounds good. Let me know when you've pushed the other changes and > I'll give it a whirl. Right now test_datameasure and test_clf are failing. I work on the latter, Yarik on the former. Michael -- GPG key: 1024D/3144BE0F Michael Hanke http://mih.voxindeserto.de _______________________________________________ Pkg-ExpPsy-PyMVPA mailing list [email protected] http://lists.alioth.debian.org/mailman/listinfo/pkg-exppsy-pymvpa
