Hi, I'm trying to compile and install pymvpa-0.50-dev on 64bit architecture and I seem to be having trouble compiling 'svmc_wrap.cpp'.
After running 'make 3rd' and 'python setup.py build_ext' I get the attached errors below. Output of mvpa.wtf() also attached. This reports "have libsvm = no" though it clearly compiles with 'make 3rd'. I can subsequently run 'python setup.py install --prefix=~' however there are no SVM classifiers available in SVM. Dan PS. It may be related to http://osdir.com/ml/debian-bugs-rc/2010-06/msg00478.html? ########################################### running build_ext running build_src build_src building extension "mvpa.clfs.libsmlrc.smlrc" sources building extension "mvpa.clfs.libsvmc._svmc" sources building data_files sources build_src: building npy-pkg config files customize UnixCCompiler customize UnixCCompiler using build_ext customize UnixCCompiler customize UnixCCompiler using build_ext building 'mvpa.clfs.libsvmc._svmc' extension compiling C++ sources C compiler: g++44 -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -fPIC compile options: '-I/usr/include/numpy -I3rd/libsvm -I/usr/support/apps/apps/PYTHON/2.5.5/gcc/4.4.0/64/lib/python2.5/site-packages/numpy/core/include -I/usr/support/apps/apps/PYTHON/2.5.5/gcc/4.4.0/64/include/python2.5 -c' g++44: build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp: In function 'int SWIG_Python_ConvertFunctionPtr(PyObject*, void**, swig_type_info*)': build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2051: error: invalid conversion from 'const char*' to 'char*' build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp: In constructor 'swig::PyObject_ptr::PyObject_ptr(PyObject*, bool)': build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2518: warning: suggest explicit braces to avoid ambiguous 'else' build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp: In function 'int SWIG_AsCharPtrAndSize(PyObject*, char**, size_t*, int*)': build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2846: error: cannot convert 'int*' to 'Py_ssize_t*' for argument '3' to 'int PyString_AsStringAndSize(PyObject*, char**, Py_ssize_t*)' build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp: In function 'void SWIG_Python_FixMethods(PyMethodDef*, swig_const_info*, swig_type_info**, swig_type_info**)': build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:6311: error: invalid conversion from 'const char*' to 'char*' build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp: In function 'int SWIG_Python_ConvertFunctionPtr(PyObject*, void**, swig_type_info*)': build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2051: error: invalid conversion from 'const char*' to 'char*' build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp: In constructor 'swig::PyObject_ptr::PyObject_ptr(PyObject*, bool)': build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2518: warning: suggest explicit braces to avoid ambiguous 'else' build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp: In function 'int SWIG_AsCharPtrAndSize(PyObject*, char**, size_t*, int*)': build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:2846: error: cannot convert 'int*' to 'Py_ssize_t*' for argument '3' to 'int PyString_AsStringAndSize(PyObject*, char**, Py_ssize_t*)' build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp: In function 'void SWIG_Python_FixMethods(PyMethodDef*, swig_const_info*, swig_type_info**, swig_type_info**)': build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp:6311: error: invalid conversion from 'const char*' to 'char*' error: Command "g++44 -fno-strict-aliasing -DNDEBUG -g -fwrapv -O3 -Wall -fPIC -I/usr/include/numpy -I3rd/libsvm -I/usr/support/apps/apps/PYTHON/2.5.5/gcc/4.4.0/64/lib/python2.5/site-packages/numpy/core/include -I/usr/support/apps/apps/PYTHON/2.5.5/gcc/4.4.0/64/include/python2.5 -c build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.cpp -o build/temp.linux-x86_64-2.5/build/src.linux-x86_64-2.5/mvpa/clfs/libsvmc/svmc_wrap.o" failed with exit status 1 ################################################################################ mvpa.wtf() output Current date: 2010-06-22 15:01 PyMVPA: Version: 0.5.0.dev Path: mvpa/__init__.pyc Version control (GIT): GIT information could not be obtained due "mvpa/.. is not under GIT" SYSTEM: OS: posix Linux 2.6.18-164.6.1.el5 #1 SMP Tue Nov 3 23:02:51 EST 2009 Distribution: redhat/5.4/Boron EXTERNALS: Present: cPickle, ctypes, gzip, nose, numpy Absent: atlas_fsl, atlas_pymvpa, elasticnet, glmnet, good scipy.stats.rdist, good scipy.stats.rv_discrete.ppf, griddata, h5py, hcluster, lars, libsvm, libsvm verbosity control, lxml, matplotlib, mdp, mdp ge 2.4, nibabel, nifti, nifti ge 0.20090205.1, nipy, openopt, pprocess, pylab, pylab plottable, pywt, pywt wp reconstruct, pywt wp reconstruct fixed, reportlab, rpy2, running ipython env, scipy, sg ge 0.6.4, sg ge 0.6.5, sg_fixedcachesize, shogun, shogun.krr, shogun.lightsvm, shogun.mpd, shogun.svrlight, weave Versions of critical externals: numpy : 1.4.1 ctypes : 1.0.3 numpy : 1.4.1 RUNTIME: PyMVPA Environment Variables: PYTHONPATH : "/home/tcin/danmc/scripts/python" PyMVPA Runtime Configuration: [externals] have griddata = no have pprocess = no have good scipy.stats.rdist = no have pylab plottable = no have pywt wp reconstruct = no have mdp = no have lxml = no have running ipython env = no have nibabel = no have sg_fixedcachesize = no have elasticnet = no have shogun.mpd = no have matplotlib = no have pywt wp reconstruct fixed = no have scipy = no have reportlab = no have openopt = no have libsvm = no have h5py = no have shogun.krr = no have nifti ge 0.20090205.1 = no have nose = yes have weave = no have atlas_fsl = no have ctypes = yes have hcluster = no have sg ge 0.6.4 = no have sg ge 0.6.5 = no have good scipy.stats.rv_discrete.ppf = no have libsvm verbosity control = no have mdp ge 2.4 = no have shogun.svrlight = no have shogun = no have nipy = no have glmnet = no have lars = no have nifti = no have atlas_pymvpa = no have cpickle = yes have numpy = yes have pylab = no have rpy2 = no have shogun.lightsvm = no have pywt = no have gzip = yes [general] verbose = 1 Process Information: Name: python State: R (running) SleepAVG: 96% Tgid: 26682 Pid: 26682 PPid: 9640 TracerPid: 0 Uid: 5070 5070 5070 5070 Gid: 3008 3008 3008 3008 FDSize: 256 Groups: 1005 3008 3065 VmPeak: 147312 kB VmSize: 146292 kB VmLck: 0 kB VmHWM: 14820 kB VmRSS: 14820 kB VmData: 11436 kB VmStk: 192 kB VmExe: 1140 kB VmLib: 6080 kB VmPTE: 240 kB StaBrk: 12226000 kB Brk: 12b09000 kB StaStk: 7fff163b40c0 kB Threads: 1 SigQ: 0/69632 SigPnd: 0000000000000000 ShdPnd: 0000000000000000 SigBlk: 0000000000000000 SigIgn: 0000000001001000 SigCgt: 0000000180000002 CapInh: 0000000000000000 CapPrm: 0000000000000000 CapEff: 0000000000000000 Cpus_allowed: 00000000,00000000,00000000,00000000,00000000,00000000,00000000,000000ff Mems_allowed: 00000000,00000003
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